TCONS_00040081 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040081
Unique NameTCONS_00040081
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length654

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040081 ID=TCONS_00040081|Name=TCONS_00040081|organism=Clytia hemisphaerica|type=transcript|length=654bp
CACTTGATTATGGCTTGATCTACGAAGGATCTGAGTCAGGAGATATTCTG
CTTCACGGTTTTGCAGATGCTGATTGGGCTGGAGATATTGATACACGAAA
ATCCACCTCTGGTTACGTATTCAAAGTCGGAAATTCTACAGTATCGTGGA
AATCCAAGCGTCAATCGATCGTTGCACTCTCGACAACCGAAGCTGAATAT
GTAGCCTTATCTCAAGCAACGCAGGAGGTTATTTGGCTACGAACCTTATT
CAAAGGTATGGATTTCGAGCAAACTGATCcaacaaaaatgtttgaagacA
ATCAAGGAGCTATTGAGTTGGCAAAAAACCCAACTCACCACTCTCGAACC
AAACACATTGACATTAAGTTTCATCACGTGCGCGATGCTGTCGCAAAGAA
AGTAATTGACTTGGAGTATTGCCCTACTGATGAGAGAGGGACTTAATGTT
AAAAAGGTTTAATGACTTTAATGACTAAcggatttgaaatttatttagat
tttattttttatacgtAAAACGTCAAGTGGGAGTGTtgaaaatatgacgt
tttactTACTTATCTGTATGTCTTAACTTTTTCTGCTAATTGCtttgttt
attattttacaGCTGATGTCATTTCCATTAGGGGTTTTACATCGGCTGTC
CTTT
Run BLAST on NCBI

protein sequence of TCONS_00040081-protein

>TCONS_00040081-protein ID=TCONS_00040081-protein|Name=TCONS_00040081-protein|organism=Clytia hemisphaerica|type=polypeptide|length=147bp
LDYGLIYEGSESGDILLHGFADADWAGDIDTRKSTSGYVFKVGNSTVSWK
SKRQSIVALSTTEAEYVALSQATQEVIWLRTLFKGMDFEQTDPTKMFEDN
QGAIELAKNPTHHSRTKHIDIKFHHVRDAVAKKVIDLEYCPTDERGT
Run BLAST on NCBI

transcript from alignment at sc0002302:11652..12305

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040081 ID=TCONS_00040081|Name=TCONS_00040081|organism=Clytia hemisphaerica|type=transcript|length=654bp|location=Sequence derived from alignment at sc0002302:11652..12305 (Clytia hemisphaerica)
AAAGGACAGCCGATGTAAAACCCCTAATGGAAATGACATCAGCtgtaaaa
taataaacaaaGCAATTAGCAGAAAAAGTTAAGACATACAGATAAGTAag
taaaacgtcatattttcaACACTCCCACTTGACGTTTTacgtataaaaaa
taaaatctaaataaatttcaaatccgTTAGTCATTAAAGTCATTAAACCT
TTTTAACATTAAGTCCCTCTCTCATCAGTAGGGCAATACTCCAAGTCAAT
TACTTTCTTTGCGACAGCATCGCGCACGTGATGAAACTTAATGTCAATGT
GTTTGGTTCGAGAGTGGTGAGTTGGGTTTTTTGCCAACTCAATAGCTCCT
TGATTgtcttcaaacatttttgttgGATCAGTTTGCTCGAAATCCATACC
TTTGAATAAGGTTCGTAGCCAAATAACCTCCTGCGTTGCTTGAGATAAGG
CTACATATTCAGCTTCGGTTGTCGAGAGTGCAACGATCGATTGACGCTTG
GATTTCCACGATACTGTAGAATTTCCGACTTTGAATACGTAACCAGAGGT
GGATTTTCGTGTATCAATATCTCCAGCCCAATCAGCATCTGCAAAACCGT
GAAGCAGAATATCTCCTGACTCAGATCCTTCGTAGATCAAGCCATAATCA
AGTG

Coding sequence (CDS) from alignment at sc0002302:11652..12305

>TCONS_00040081 ID=TCONS_00040081|Name=TCONS_00040081|organism=Clytia hemisphaerica|type=CDS|length=444bp|location=Sequence derived from alignment at sc0002302:11652..12305 (Clytia hemisphaerica)
TTAAGTCCCTCTCTCATCAGTAGGGCAATACTCCAAGTCAATTACTTTCT
TTGCGACAGCATCGCGCACGTGATGAAACTTAATGTCAATGTGTTTGGTT
CGAGAGTGGTGAGTTGGGTTTTTTGCCAACTCAATAGCTCCTTGATTgtc
ttcaaacatttttgttgGATCAGTTTGCTCGAAATCCATACCTTTGAATA
AGGTTCGTAGCCAAATAACCTCCTGCGTTGCTTGAGATAAGGCTACATAT
TCAGCTTCGGTTGTCGAGAGTGCAACGATCGATTGACGCTTGGATTTCCA
CGATACTGTAGAATTTCCGACTTTGAATACGTAACCAGAGGTGGATTTTC
GTGTATCAATATCTCCAGCCCAATCAGCATCTGCAAAACCGTGAAGCAGA
ATATCTCCTGACTCAGATCCTTCGTAGATCAAGCCATAATCAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024299XLOC_024299Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040081-proteinTCONS_00040081-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040081-exon-sc0002302-1491911889:11652..12305TCONS_00040081-exon-sc0002302-1491911889:11652..12305Clytia hemisphaericaexon
TCONS_00040081-exon-sc0002302-1510915933:11652..12305TCONS_00040081-exon-sc0002302-1510915933:11652..12305Clytia hemisphaericaexon
TCONS_00040081-exon-sc0002302-1575043694:11652..12305TCONS_00040081-exon-sc0002302-1575043694:11652..12305Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002302supercontigsc0002302:11652..12305 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.474815	0.599679	0.625305	1.12011	13.7233	8.82359	1.73245	2.93124	0.884495	3.96501	0.729715	1.17096	1.50313	1.96588	0.931859	0.692819	0.813274	0.678497	4.05156	3.89165	0.338226	1.01979	0.211425	0.600719	0	0.152787	0.252787	0.727429	0.103155	0.466989
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR012337RNaseH-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040081 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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