TCONS_00040079 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040079
Unique NameTCONS_00040079
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length296

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040079 ID=TCONS_00040079|Name=TCONS_00040079|organism=Clytia hemisphaerica|type=transcript|length=296bp
CTAGCCATTTGTTGTCTATATTTTCTCGGACCTTTCGGTAAACTTGATCA
CATATTAATTCAATATCAATATCAGAATTGTAATNAAACTTGATCACATA
ATAATTCAATATCAATATCAGAATTTTCATTCCGCGGCCAAGGGTTAAAC
GTTGTGACATgatgtaatattttgaaaatgaaccaaGCCTCCTCAAGTTG
ACGTTTATTAAGAGATGTTTTCCATATGTTGTTGTATATCTCAGTAGCGC
TTTCGAAAGATACAACTCCTATGCACATTTGCAAATCAATATTGTT
Run BLAST on NCBI

transcript from alignment at sc0002302:5161..5456

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040079 ID=TCONS_00040079|Name=TCONS_00040079|organism=Clytia hemisphaerica|type=transcript|length=296bp|location=Sequence derived from alignment at sc0002302:5161..5456 (Clytia hemisphaerica)
AACAATATTGATTTGCAAATGTGCATAGGAGTTGTATCTTTCGAAAGCGC
TACTGAGATATACAACAACATATGGAAAACATCTCTTAATAAACGTCAAC
TTGAGGAGGCttggttcattttcaaaatattacatcATGTCACAACGTTT
AACCCTTGGCCGCGGAATGAAAATTCTGATATTGATATTGAATTATTATG
TGATCAAGTTTNATTACAATTCTGATATTGATATTGAATTAATATGTGAT
CAAGTTTACCGAAAGGTCCGAGAAAATATAGACAACAAATGGCTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024297XLOC_024297Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040079-exon-sc0002302-1491911889:5161..5456TCONS_00040079-exon-sc0002302-1491911889:5161..5456Clytia hemisphaericaexon
TCONS_00040079-exon-sc0002302-1510915933:5161..5456TCONS_00040079-exon-sc0002302-1510915933:5161..5456Clytia hemisphaericaexon
TCONS_00040079-exon-sc0002302-1575043694:5161..5456TCONS_00040079-exon-sc0002302-1575043694:5161..5456Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002302supercontigsc0002302:5161..5456 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.406912	0	0	0	0	0	1.0463	1.95907	1.37159	0	1.23677	1.08401	0.270625	2.24837	0.462116	0.247961	0	1.56547	0	2.2632	0.393426	0.575698	0	0.848337	6.99014	3.11927	0	0.595467	0	1.38045
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040079 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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