TCONS_00040076 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040076
Unique NameTCONS_00040076
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length276

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040076 ID=TCONS_00040076|Name=TCONS_00040076|organism=Clytia hemisphaerica|type=transcript|length=276bp
gtgttgttgtgtcctcttgttggtattgttttgtctctttttgtttatta
cattttttgaatagtTGAAGGTTCAATACTTCTTTGACTATATATAGTAT
AAAGAATAATAATATATCTATTATCTTGTCTCGATGTCTCTGTCTCGATA
TTTCATCTTCACAATACAACATCTTCCCCTTGGCAATGTGATGTTCACCG
GGTTGATTGACAAAGATGGGCGTGGTCAGGAACAATCTGAAATGATAAAC
TTTAAAGTGCAGTATCAACGTTCTAT
Run BLAST on NCBI

transcript from alignment at sc0002301:3..278

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040076 ID=TCONS_00040076|Name=TCONS_00040076|organism=Clytia hemisphaerica|type=transcript|length=276bp|location=Sequence derived from alignment at sc0002301:3..278 (Clytia hemisphaerica)
ATAGAACGTTGATACTGCACTTTAAAGTTTATCATTTCAGATTGTTCCTG
ACCACGCCCATCTTTGTCAATCAACCCGGTGAACATCACATTGCCAAGGG
GAAGATGTTGTATTGTGAAGATGAAATATCGAGACAGAGACATCGAGACA
AGATAATAGATATATTATTATTCTTTATACTATATATAGTCAAAGAAGTA
TTGAACCTTCAactattcaaaaaatgtaataaacaaaaagagacaaaaca
ataccaacaagaggacacaacaacac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024294XLOC_024294Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040076-exon-sc0002301-1491911889:3..278TCONS_00040076-exon-sc0002301-1491911889:3..278Clytia hemisphaericaexon
TCONS_00040076-exon-sc0002301-1510915933:3..278TCONS_00040076-exon-sc0002301-1510915933:3..278Clytia hemisphaericaexon
TCONS_00040076-exon-sc0002301-1575043694:3..278TCONS_00040076-exon-sc0002301-1575043694:3..278Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002301supercontigsc0002301:3..278 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.56429	1.52543	5.3135	4.04322	4.92223	2.7783	1.34076	1.8828	3.07579	2.5105	4.7545	3.47718	3.68394	1.71811	3.98633	7.54406	2.74004	3.20966	2.77145	3.48015	1.00829	2.21315	1.79358	2.17417	0	1.49892	3.57491	5.34134	3.47247	1.76895
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040076 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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