TCONS_00040070 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040070
Unique NameTCONS_00040070
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length703

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040070 ID=TCONS_00040070|Name=TCONS_00040070|organism=Clytia hemisphaerica|type=transcript|length=703bp
AAATATTTGATAAATCAGCAGAGTTCTGATTCCAATAATCAACAAGCTTT
GTCATTTCCCGAATATAGTccttcccactttttcctgatGGTAGAAGGAA
TAAGttctttcgaaagaaaacaATTTCCTCGTAGCAAGCATTTATTATCT
GTTTAAGGTCTGCATGTGAATGATTTCCCCAAATCGAGTTTAGAGGTGTT
GGTTGGGCGGCGGGTGGTTGAGTTGGTTGGCTGGGTGGTTGGATTGGTGC
AGAATGAGTATTGACACTGGGAGTACTGGGTGTGGTCTGGTCTTGAGTTG
GttggttttgaagaaaattttgggtATTGGTATCGGCAATTGGGTCAGCA
TGTTGTTCTGGGATTGCATCCACTCTCTTTTTCATAAGAGTGCATTTTTT
CATATGATTTGTTCTACCAGATTTTGTGGTAAAGCTTCTTTCACAGTTCT
CACATGGAAAAGGAAAGTCCTGGGGTGGTTTTTCCGGTTGGTGTTGGTTA
ATGTTAGGCGGTTCAGGTGGTGGTTGGGAATTTGGAAGAATTTTGTCGGT
GAGGGTTGTGTCGTGAAGCTGGTTGTTGGGTGGTCTACGATTGTCGGCTG
GTATGATGTTGAAGAAACTTTCACCCGGTCTAAGTGGACGTGTTGTTGTG
ACTTGCCACTGTCTGCGTTGGATACGTGTTGAGGGAAGTGTTGGTGGGGT
TTG
Run BLAST on NCBI

protein sequence of TCONS_00040070-protein

>TCONS_00040070-protein ID=TCONS_00040070-protein|Name=TCONS_00040070-protein|organism=Clytia hemisphaerica|type=polypeptide|length=234bp
QTPPTLPSTRIQRRQWQVTTTRPLRPGESFFNIIPADNRRPPNNQLHDTT
LTDKILPNSQPPPEPPNINQHQPEKPPQDFPFPCENCERSFTTKSGRTNH
MKKCTLMKKRVDAIPEQHADPIADTNTQNFLQNQPTQDQTTPSTPSVNTH
SAPIQPPSQPTQPPAAQPTPLNSIWGNHSHADLKQIINACYEEIVFFRKN
LFLLPSGKSGKDYIREMTKLVDYWNQNSADLSNI
Run BLAST on NCBI

transcript from alignment at sc0002298:14837..15539

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040070 ID=TCONS_00040070|Name=TCONS_00040070|organism=Clytia hemisphaerica|type=transcript|length=703bp|location=Sequence derived from alignment at sc0002298:14837..15539 (Clytia hemisphaerica)
CAAACCCCACCAACACTTCCCTCAACACGTATCCAACGCAGACAGTGGCA
AGTCACAACAACACGTCCACTTAGACCGGGTGAAAGTTTCTTCAACATCA
TACCAGCCGACAATCGTAGACCACCCAACAACCAGCTTCACGACACAACC
CTCACCGACAAAATTCTTCCAAATTCCCAACCACCACCTGAACCGCCTAA
CATTAACCAACACCAACCGGAAAAACCACCCCAGGACTTTCCTTTTCCAT
GTGAGAACTGTGAAAGAAGCTTTACCACAAAATCTGGTAGAACAAATCAT
ATGAAAAAATGCACTCTTATGAAAAAGAGAGTGGATGCAATCCCAGAACA
ACATGCTGACCCAATTGCCGATACCAATacccaaaattttcttcaaaacc
aaCCAACTCAAGACCAGACCACACCCAGTACTCCCAGTGTCAATACTCAT
TCTGCACCAATCCAACCACCCAGCCAACCAACTCAACCACCCGCCGCCCA
ACCAACACCTCTAAACTCGATTTGGGGAAATCATTCACATGCAGACCTTA
AACAGATAATAAATGCTTGCTACGAGGAAATtgttttctttcgaaagaaC
TTATTCCTTCTACCatcaggaaaaagtgggaaggACTATATTCGGGAAAT
GACAAAGCTTGTTGATTATTGGAATCAGAACTCTGCTGATTTATCAAATA
TTT

Coding sequence (CDS) from alignment at sc0002298:14837..15539

>TCONS_00040070 ID=TCONS_00040070|Name=TCONS_00040070|organism=Clytia hemisphaerica|type=CDS|length=702bp|location=Sequence derived from alignment at sc0002298:14837..15539 (Clytia hemisphaerica)
CAAACCCCACCAACACTTCCCTCAACACGTATCCAACGCAGACAGTGGCA
AGTCACAACAACACGTCCACTTAGACCGGGTGAAAGTTTCTTCAACATCA
TACCAGCCGACAATCGTAGACCACCCAACAACCAGCTTCACGACACAACC
CTCACCGACAAAATTCTTCCAAATTCCCAACCACCACCTGAACCGCCTAA
CATTAACCAACACCAACCGGAAAAACCACCCCAGGACTTTCCTTTTCCAT
GTGAGAACTGTGAAAGAAGCTTTACCACAAAATCTGGTAGAACAAATCAT
ATGAAAAAATGCACTCTTATGAAAAAGAGAGTGGATGCAATCCCAGAACA
ACATGCTGACCCAATTGCCGATACCAATacccaaaattttcttcaaaacc
aaCCAACTCAAGACCAGACCACACCCAGTACTCCCAGTGTCAATACTCAT
TCTGCACCAATCCAACCACCCAGCCAACCAACTCAACCACCCGCCGCCCA
ACCAACACCTCTAAACTCGATTTGGGGAAATCATTCACATGCAGACCTTA
AACAGATAATAAATGCTTGCTACGAGGAAATtgttttctttcgaaagaaC
TTATTCCTTCTACCatcaggaaaaagtgggaaggACTATATTCGGGAAAT
GACAAAGCTTGTTGATTATTGGAATCAGAACTCTGCTGATTTATCAAATA
TT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024289XLOC_024289Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040070-exon-sc0002298-1491911889:14837..15539TCONS_00040070-exon-sc0002298-1491911889:14837..15539Clytia hemisphaericaexon
TCONS_00040070-exon-sc0002298-1510915933:14837..15539TCONS_00040070-exon-sc0002298-1510915933:14837..15539Clytia hemisphaericaexon
TCONS_00040070-exon-sc0002298-1575043694:14837..15539TCONS_00040070-exon-sc0002298-1575043694:14837..15539Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040070-proteinTCONS_00040070-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002298supercontigsc0002298:14837..15539 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.143635	0.420199	0.813152	0.55688	0	0	0	0	0	0	0	0	0.191054	0.0496028	0.0407802	0	0	0	1.37418	1.19832	0	0	0	0	0	0	0.0984758	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040070 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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