TCONS_00040068 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040068
Unique NameTCONS_00040068
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length406

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040068 ID=TCONS_00040068|Name=TCONS_00040068|organism=Clytia hemisphaerica|type=transcript|length=406bp
TTTATAAAGAACGAAGTATTCTGTTTTATGTGAAAATTTCTaagtttgaa
aacgaaagtactttgaCTCGTCACCCCACCCACCATATTGACGGCTTAAC
GGCTTATCAATCtctctcaggcaaaaatcccGGCTTAAGGGTCGGTTTAG
GTTCTGGCTTAACTCAATTACGGCTTAACTCCAAAAGAGGcgtaactttt
attttatttcaaaaagtctTAAATTGAAAACGAATTTATTGAGATGACCA
CACCCTAATGaccatgaaaattttaattgtttctttttctattgttttca
gtaaattttttttgaaaattttataaacCTCTCCAGAAATCACCACACAG
ACTCTTAAAGATTTCCCTTTCTGATCCTCTTAAAGTGACATTGCACAGAC
TAGCAA
Run BLAST on NCBI

transcript from alignment at sc0002297:9866..10271

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040068 ID=TCONS_00040068|Name=TCONS_00040068|organism=Clytia hemisphaerica|type=transcript|length=406bp|location=Sequence derived from alignment at sc0002297:9866..10271 (Clytia hemisphaerica)
TTGCTAGTCTGTGCAATGTCACTTTAAGAGGATCAGAAAGGGAAATCTTT
AAGAGTCTGTGTGGTGATTTCTGGAGAGgtttataaaattttcaaaaaaa
atttactgaaaacaatagaaaaagaaacaattaaaattttcatggtCATT
AGGGTGTGGTCATCTCAATAAATTCGTTTTCAATTTAagactttttgaaa
taaaataaaagttacgCCTCTTTTGGAGTTAAGCCGTAATTGAGTTAAGC
CAGAACCTAAACCGACCCTTAAGCCgggatttttgcctgagagaGATTGA
TAAGCCGTTAAGCCGTCAATATGGTGGGTGGGGTGACGAGtcaaagtact
ttcgttttcaaacttAGAAATTTTCACATAAAACAGAATACTTCGTTCTT
TATAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024287XLOC_024287Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040068-exon-sc0002297-1491911889:9866..10271TCONS_00040068-exon-sc0002297-1491911889:9866..10271Clytia hemisphaericaexon
TCONS_00040068-exon-sc0002297-1510915933:9866..10271TCONS_00040068-exon-sc0002297-1510915933:9866..10271Clytia hemisphaericaexon
TCONS_00040068-exon-sc0002297-1575043694:9866..10271TCONS_00040068-exon-sc0002297-1575043694:9866..10271Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002297supercontigsc0002297:9866..10271 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.90045	0.878081	1.01954	0	1.45717	1.34339	0.694603	0.867038	0.303517	0.187977	0.729821	0.239878	0.359317	0	0.511305	0.768193	0.270386	0.277137	0.574319	0.400656	0.174121	0	0.206488	0.187727	0.966774	2.07077	1.2347	0.52708	0.199886	0.203652
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040068 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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