TCONS_00040064 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040064
Unique NameTCONS_00040064
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length873

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040064 ID=TCONS_00040064|Name=TCONS_00040064|organism=Clytia hemisphaerica|type=transcript|length=873bp
CCGGGCCACTGACTCAGGGGTGTTCCAATGGGTTTAAATACATCAAATTG
TTATTTGGAAAAGTGTGTGTGTGTTCTGGTGACTTTGGGCAATTCAATGG
GAAACGAGTGATGGCTTTGCATCATATGAGATGTCCAGGACTTGCCTTAA
ATCATCAGTCGACTGCGTTTAGTTCTTTTGTAGCAAGATCCATGCTTGAA
TCTTAAAATAATAATGTATGTAAAGGAAGAAATTAAACAATTAAAGTAAA
ATAATTAACAAAAAAGCagttaaaatatttaaataaaacgGTGTATTAAT
AATTGTTTCCCAATTCCAACATAACGTCATTATAACATCTTTCTCACGTT
CGTAcgttaatgggataaacttttgcggaTTTGGTGGATTGGGGTGTCAT
CCAaaaaaatccgccaaattaagtcccAAAGGagatttggaagggcctca
tccgcgaaatatttctaaacaaaactcaaaatatgtcaaataaatacttt
ttgaatggttacttgcatcaaagaggcatAAATAATGTATATTTCAACAA
CctacatgcatgatttgacagtaaaagtcacaaaatggtgaaaatattgC
AACCCAATAGTGCCAACCCTGAAATTAAGTCCCcacgaaagtttatccca
ttaaagtacaatATTCACATAACATAACAATATATACCAGACGGGTTTTA
GAATatatcatgacgtataattGCATATTCAAATCTCCAATTATGATTAT
TGCACCTTAAATACTGATAGAGTTGGGAACGACTTTAGGTGACAACCACG
GATAGGCGAATCTCCTTTTTGCGTTCTTCTCATCATTTTCTTTGGCAATT
ACCTGCAAACGTTCgtaaaacct
Run BLAST on NCBI

transcript from alignment at sc0002295:682..1554

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040064 ID=TCONS_00040064|Name=TCONS_00040064|organism=Clytia hemisphaerica|type=transcript|length=873bp|location=Sequence derived from alignment at sc0002295:682..1554 (Clytia hemisphaerica)
aggttttacGAACGTTTGCAGGTAATTGCCAAAGAAAATGATGAGAAGAA
CGCAAAAAGGAGATTCGCCTATCCGTGGTTGTCACCTAAAGTCGTTCCCA
ACTCTATCAGTATTTAAGGTGCAATAATCATAATTGGAGATTTGAATATG
CaattatacgtcatgatatATTCTAAAACCCGTCTGGTATATATTGTTAT
GTTATGTGAATattgtactttaatgggataaactttcgtgGGGACTTAAT
TTCAGGGTTGGCACTATTGGGTTGcaatattttcaccattttgtgacttt
tactgtcaaatcatgcatgtagGTTGTTGAAATATACATTATTTatgcct
ctttgatgcaagtaaccattcaaaaagtatttatttgacatattttgagt
tttgtttagaaatatttcgcggatgaggcccttccaaatctCCTTTggga
cttaatttggcggattttttTGGATGACACCCCAATCCACCAAAtccgca
aaagtttatcccattaacgTACGAACGTGAGAAAGATGTTATAATGACGT
TATGTTGGAATTGGGAAACAATTATTAATACACcgttttatttaaatatt
ttaactGCTTTTTTGTTAATTATTTTACTTTAATTGTTTAATTTCTTCCT
TTACATACATTATTATTTTAAGATTCAAGCATGGATCTTGCTACAAAAGA
ACTAAACGCAGTCGACTGATGATTTAAGGCAAGTCCTGGACATCTCATAT
GATGCAAAGCCATCACTCGTTTCCCATTGAATTGCCCAAAGTCACCAGAA
CACACACACACTTTTCCAAATAACAATTTGATGTATTTAAACCCATTGGA
ACACCCCTGAGTCAGTGGCCCGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024283XLOC_024283Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040064-exon-sc0002295-1491911889:682..1554TCONS_00040064-exon-sc0002295-1491911889:682..1554Clytia hemisphaericaexon
TCONS_00040064-exon-sc0002295-1510915933:682..1554TCONS_00040064-exon-sc0002295-1510915933:682..1554Clytia hemisphaericaexon
TCONS_00040064-exon-sc0002295-1575043694:682..1554TCONS_00040064-exon-sc0002295-1575043694:682..1554Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002295supercontigsc0002295:682..1554 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
36.0371	36.3954	32.6189	30.1441	0	0.379659	8.38264	7.48105	6.99403	9.53361	2.97811	5.3173	3.94308	4.5493	17.464	20.0605	11.2895	11.0398	9.21485	6.66517	4.67274	5.02099	14.6638	12.969	2.02257	3.73741	5.35245	3.99081	3.13893	3.76898
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040064 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top