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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00040063 ID=TCONS_00040063|Name=TCONS_00040063|organism=Clytia hemisphaerica|type=transcript|length=1120bp GATTTTTAgaactttaaagaaagaaaattatgaagattTTTCTAATGAAA GGTCCACGTTATTTGGTTGCCGCCGCCATTTGTTCATTTTTACAATTCAA TGAAGCTCTTACAATCGAGACATCATCACCAGAAAAATATGAATCTGGAA AACCAGCCACTCTGCGATGGGATGTTACGTACATAGGAGATAAAAATCTC CACTCAATGAGACTAGATGTTTACCTTCAAGAAAATGGGACGCGAATACT TGTGGGTACCCACGCTGGTGTGGAAAAAGACTTCCCCGATTTTGATACTG AAATCAGTCCAGCATCAAATTCAATATCAGTCAACGTGACCATTAAAAAA CTCAAGTCTGGTGATTTTTACAACTTCACTTTGGAGGCCGTCGAACAAAA GAAAACACCGCCATTTGAGATTGTCGGCCGACAGGAAAAGGCGATTGTCG TATCTGTCGTATCTGACGTCAAAAaTCCGACAGGGAAGGATGAAGAGGGA AATAATTCCACCGGTATTATTGTGGGGTCTGTTTTTGGCGCCCTTTTTAT TTGTGGTTTAATAGTGGTATTGGTTATTGTACGGAGGCGAAAATATAACA GCAGACGGAACGGAGAGAATGGAGGGAACGAAGAAATGGTGGCGATGTCG AACTGAGTTTGAATTCAAAGCACTCTGATTGGTTAAGTGAACCactaata tataatatataattccGTAATAGCTTTCAAGAAACTGTTAGCATATTTCT GTTAAGGATTGTTGACTGGAATCGTGTGAAGCTACAGTTTAAACTCATGC GGTTGATCTTATTGGATTGAATACAAAATGTGCTTTCTGTGCTCTTACCC TGCAcattgttttgtttatgtgtttgcttttagccaatgagatggtttgt ttactcgaaattttggtgactttttatacgaagcAGCTAGCcgtaaaaag gtgtattgataTCTGATACATCTTTTGGTGGTGAGCGTAACCGAGCGGCT ACTTTAATCGGATAAagtttcgcggggattaaattttgcgttTGGGACTA TCCGCGAAgttcaaaaatgtaaacaaaaagacTTTCCATGGTttcctaca ttccactgctcccaaaatct Run BLAST on NCBI protein sequence of TCONS_00040063-protein >TCONS_00040063-protein ID=TCONS_00040063-protein|Name=TCONS_00040063-protein|organism=Clytia hemisphaerica|type=polypeptide|length=208bp
MKIFLMKGPRYLVAAAICSFLQFNEALTIETSSPEKYESGKPATLRWDVT YIGDKNLHSMRLDVYLQENGTRILVGTHAGVEKDFPDFDTEISPASNSIS VNVTIKKLKSGDFYNFTLEAVEQKKTPPFEIVGRQEKAIVVSVVSDVKNP TGKDEEGNNSTGIIVGSVFGALFICGLIVVLVIVRRRKYNSRRNGENGGN EEMVAMSN Run BLAST on NCBI transcript from alignment at sc0002295:16696..22483- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00040063 ID=TCONS_00040063|Name=TCONS_00040063|organism=Clytia hemisphaerica|type=transcript|length=5788bp|location=Sequence derived from alignment at sc0002295:16696..22483- (Clytia hemisphaerica) GATTTTTAGAACTTTAAAGAAAGAAAATTATGAAGATTTTTCTAATGAAA
GGTCCACGTTATTTGGTTGCCGCCGCCATTTGTTCATTTTTACAATTCAA
TGAAGGTATTTTATATGTTTTTTTTTGTTTTCTTGAAATATTTTGATTAA
AAACACCCCTGTCTCAGTGACCTTTAGGGGAATTATTTATCCAGTTTAGA
AAATGAAGGTGTCAATGGGGGTTGTTTAAAATGTCTCACTTTTGGGTGAG
GGTATTAATTCTTTTACTTAAGGGAATCCAATCAGTTTTGCGTTATACAA
GATCTACATCACCACAAGAAATTACCGTTTTTTGTTTAATGAAGTTTTAG
AATCACTTTTTTTTAAACGCTTTCTTTGGTAATTTTCAAAAGTTGTTTAA
ACTAAAGCCTCCCTGTGTGGTTTCTATAATTTCTGATATTTCTCTGACCT
TTTAGCTCTTACAATCGAGACATCATCACCAGAAAAATATGAATCTGGAA
AACCAGCCACTCTGCGATGGGATGTTACGTACATAGGAGATAAAAATCTC
CACTCAATGAGACTAGATGTTTACCTTCAAGAAAATGGGACGCGAATACT
TGTGGGTACCCACGCTGGTGTGGAAAAAGACTTCCCCGATTTTGATACTG
AAATCAGTCCAGCATCAAATTCAATATCAGTCAACGTGACCATTAAAAAA
CTCAAGTCTGGTGATTTTTACAACTTCACTTTGGAGGCCGTCGAACAAAA
GAAAACACCGCCATTTGAGATTGTCGGCCGACAGGAAAAGGCGATTGTCG
TATCTGTCGTATCTGACGTCAAAAGTAAGAATATCTGAAACAAAATAATT
TGACTGCAAGCACTGACCTTTATATACCCTGGAGCAAGTTTCTAAGTCCA
GACAAAGCAAAATCTTTGATCGGAGTTTTTTGAAAAGTGATACCCTAATG
GTGGCACTACTCATTAGCGGTGTAAATGCATCGAGAGTGCTAGATCTACT
TTCCCTCGAAAGGAAAACTTTTGATGATGTAGTGCAGTTAAGGCCGGTCT
CCACTTGTGTGCGCTGCGATCGCACTTTTTGGCTTCAATCCTTTTTGCTT
GGAAAAAAGATTACGTCATAAAAATGTAGCGCGCGCTTGTAAAAAATGTT
GAACACATTTCAACTTTTTTTAACCGTTACGTCAGATCGCACCAATGGAG
TTGCTTCATTTTTCTTTTGACCAATAGCGTGGAAGCTTTGCTTGAAAAAG
TGCGATTGAAGCGTATGCAAGTGGAGACCGGCCTTTAGACATTAATCTTT
AACACTGCAATGACTTCTTTACGGGTACCAAGTAAAAAAAAACTTCGATC
AAAGATGGCGGATATAGCTTGGTCCAGGGTATATAAAGGTCAGTGGCTGC
AAGTTGTAATTTTATCTTAAATAATATTTTTCTCAATCATCAGCCACGGA
TCTTTTTCTCGGCAGTATTGGAGGCGAAAATCGACAAGTCAATAACAGTA
CATTTATTTGCTTGATATTTCCAAATCTGAAAAATCATATTTTCAAAATA
TTTCCAACTTTTGGAAATATGCATGAAATATGATATTTACAAAAGTATAT
GGCATTATCATATTCTCAAGATATTTCCAGGATTGAAAATCTCTTATTTC
GCCCAGTGTGATGTTTGCTTTATACATCCAAACTTACCTTCTAGTACTAT
CAAAATAATTGTATATAAAAAAAAAGGAAAGGAAAGTAGGAAGAAAACTT
ATTATCTCCGTAATATTTGAAATATGGCATACACTAAAAACCAAGTTTCC
AAATTTACGGAAGCAACGGAAAGCAATGTATGAGAAAAATAAAAACGAAC
GTATCGCAAAGGTCTTCAACTTTTGATCTAAAAGTGGTATGAAAAATCGG
AATATTTATCTAGAAGAACATCCAAAATTTTAAAAAATCATCCAAAATCA
GTTTTAAGTTTAAAAATGTTCTTAACCCTTTAAGTGCCAACGTCGAGTAT
ATTTGACATATTTGCTATGAAGGGGGCGAAGCCCTCCTGTAATGCCCAGT
TTGAGTTACAAATCGTCATTTTTGGTCCAACTAGTAGGAATTGGGTTTTG
CTTTATGTTCAAGCAAAATAAATTCAAAAGCGAGCCTTTCCAGCAAGATT
TCAAGCCAAAAAGTAAAAAAAAAATGGAAAAATTTGACAAAAATCCACTT
TTTTGAGATTTTGACCGTTTTTTGACCATTTTTGGTCAACGAAATGATCC
AAGAACTTCCAAATTTGGTTCTGTTTTACTTTGTTCTGTCCTTTAGCGAA
TTGATCTGAAGTTTTATCATTGGGGCACCTTTCCATCATTCAGTCAGGTC
CACGCAGCGAGCCTGACTGCTTTAATTACCCTAACCTAACCCCCCTTAGC
ATTTTCTTTAAAAACTTAGAAAAAAAAGGACCGTGGCACTTAAAGGGTTA
AAATGTTCTCATTTTGACCATTTTGTGGAAATATTGGGCGATTTTCTCAA
GAAATCGGATAACTTAGAGTTCCCAAAGCCTGAAAATGTTCTTAACTTGT
TCTTATAATATTTTGGCCATCGAAGCCTGATATAGTTTGTTCCTATAAAA
AACGTGTTAGTAAACAATAGAAATTTTTTACTTAACAGAGAAAATGCTCA
CTCTATCTTCATTTTTTATTTCTTTTTAAATTATCCAAAGCTTACATTAA
AACACTTGAAATTTTCTTTTCAACGAGGTATTAAGTTTAATTATATATTT
TCTCAACCTGAAGAGTAATGTTTATAAAAGGCACGGACTTCCAATTACTC
TATGAACACACGTTTTTATATAAGAATATTTATAACAAAATTGGCCAAAA
GGTATCAAATAATTTAATTTGCAAGATGAGCACACGGCCAAAAAATTTTT
TTCAGAGGGAATTTAATTTGGCGGTTAACTTAAATTAAATTTGGCAGGAA
CTTATTTTGGCAGACGAAGGACATTTCTGTCCAAAAATAGCCATTAAAAA
AGGCAAAACCTGTTTTAAAGCCTGAAATAGCACACATTTGGGTGAATAAA
TAGAGCAACTTAAATTTGGCGCATGACGGAAAAAGTTAAATTTGGCTGGA
ACTTAATTTGGCGGATTTTGACCAAATCCGCCAAACCCACCAAAATTTCT
TCCTTTAATGGATTGTCTGTAACCGATGCGTGCGTAACCGACGCGTGCGT
AACCGACCTCTAATTGACGTCATTTTTTTCGTTCTTTTTTTTTAGATCCG
ACAGGGAAGGATGAAGAGGGAAATAATTCCACCGGTATTATTGTGGGGTC
TGTTTTTGGCGCCCTTTTTATTTGTGGTTTAATAGTGGTATTGGTTATTG
TACGGAGGCGAAAATATAACAGCAGGTAATACAAACATAAAGTAGAATTA
TTTAGCTGTATAGAGGTTTTTCGTGTTTTATTAAGTTACATATTTCGGCC
ATTATGAAAGCTAGCATTCGACTTGCGTAAAGGAATCGCATCTGCAGATT
CGAACGTTAGTTTGTTTCCGTAATGGTGGAAATTACATAACTTAACCAAA
TGAGAAACCTGGCTTTAATGATGAGTAGACCTTTTCCGAACCCCATAGTT
ACCTTTTTTTATAATGTTTAAATTTTGTCTTATTGGTCAACAACAGGGAG
GACCAAAAAATACGAACAAGTCATCTTGTTATCTTTCTCAATACATCCCT
TAAAAAGTCAAATGTCATATCTTTCTGTTTCATTCTCCTTTCTTAAAATG
TTAAGTTACTATTCTGATCTGTTTGTACAGGTTGTGGCCCTTCGTGGAGA
CAATAATTCAGCTGCCTAAAGTTGTTGAATTCTCAACTTCAGTTGAGCTA
GAATCTGAGAATGTCTGTGTTTCTGTGTCTATGTCCCAAAACTTGTTAAG
TTACCATTATGTTGTGTTTGTACACCCCTCTTCTCACTGACCTACTGGAA
AAATTGGCCAAAATCTAGTCCCCGGTGGAATATTATACTCTAATTTTTGT
CCCCACTGAAAATAATGAAATAAACAAATCCCTGCAGTGTGTTTGTGGCC
CTTCGTGGAAACAAGTACTCAGCTGCCTAAAGTTGTTGAATTTTTCGAAG
CATGCCACGTAAAATACTTGTTATTATTGGCCCCAAACCCGTCCCCGTGT
ATTCCAGGCTTTATTTAAGTTATTGATTGACGCCAGAGAATACCCTGGTG
TTGGCTGTCGCAGGAACTTAAAAAAAATTGACGTTCAAAGTTATACTGCA
ATTTTTAAAAATTTTATAATATCACCTTTAACCTCTACACGCCTTTTTTA
TAAGAATAGTGTACTTTGGATGAGGGTCAAGTATTCTTAAGAAAGTGCCA
AAATTGAGGGTGAAATATTCTTAACGTATTCTTACTTTTTTAGACTTGAC
TTTTTTACAAACATGAGAAATGAACAATTTGAGAGTTTTGGAGTTTTGAG
TGAACATTTGGGTTAAAATTACATTTCTTCTTCAAATCTTCGCATTTATC
TCTAACAAAGGAAGCAGTTTTTCTGTTAACCAAATACGAAATGACTGTAT
TCTAAACAAATTCTGTGAAATTCACCCTAGAGGATATTCTTAGGGTATTT
TTACGATTTGGCCAATTTTCACTCTGATATTCTTATAGAAGATATTCTTA
TATAAAAAAAGCGTGTACACTGTACAAACCATGAAAAAGCTTTGCAGTGC
TGGATGTGCATTTGGAAACTATCAACTTCTAGGAATTAGAGGACCCCCTC
CCCGCTTAGTCAAATTTAAAAGATTTCTTCAACATACCCCTCTCGTTTTA
ATTTTACCATTTAAATATCATGTAGGTTTTCTTTTTACATCAATGTTTCC
GTTTCATATCAGACACATGGCTCATATCAGGACAGTGTCTACCTATTGCT
ATATTATGCTGATATAAGCAAAAAAAAAGGTTTTTCTTTTCCTCTTTTTG
ACCAATCTTGCTCCACATCCGTGTCAATTCAATATCAAAAAGCTTATAAA
TTAAAATTGATGAGTAAGCATCATAAGTATGTAAAAAGAAAACCTTTAAA
GGTTGCAACAACACCAGTAATTTGTGGTGACAAAGTGCTCTATACCAAGA
TAGAGCTAAATTCAAAATTTAGCAACAACATTTTTTCTTTTCGTTATTCT
GACCAATCTTGCTCCACACCCGTGTCAATCCAATGTGAAAAAGCTTGTAA
ATTAGCAAACGATATCACACTTATTTAAAAACAACACCTTTAACATATCT
TTTTATTATCTTCAAATTTTAGACGGAACGGAGAGAATGGAGGGAACGAA
GAAATGGTGGCGATGTCGAACTGAGTTTGAATTCAAAGCACTCTGATTGG
TTAAGTGAACCACTAATATATAATATATAATTCCGTAATAGCTTTCAAGA
AACTGTTAGCATATTTCTGTTAAGGATTGTTGACTGGAATCGTGTGAAGC
TACAGTTTAAACTCATGCGGTTGATCTTATTGGATTGAATACAAAATGTG
CTTTCTGTGCTCTTACCCTGCACATTGTTTTGTTTATGTGTTTGCTTTTA
GCCAATGAGATGGTTTGTTTACTCGAAATTTTGGTGACTTTTTATACGAA
GCAGCTAGCCGTAAAAAGGTGTATTGATATCTGATACATCTTTTGGTGGT
GAGCGTAACCGAGCGGCTACTTTAATCGGATAAAGTTTCGCGGGGATTAA
ATTTTGCGTTTGGGACTATCCGCGAAGTTCAAAAATGTAAACAAAAAGAC
TTTCCATGGTTTCCTACATTCCACTGCTCCCAAAATCT Coding sequence (CDS) from alignment at sc0002295:16696..22483- >TCONS_00040063 ID=TCONS_00040063|Name=TCONS_00040063|organism=Clytia hemisphaerica|type=CDS|length=2508bp|location=Sequence derived from alignment at sc0002295:16696..22483- (Clytia hemisphaerica) ACGGAACGGAGAGAATGGAGGGAACGAAGAAATGGTGGCGATGTCGAACT GAATCCGACAGGGAAGGATGAAGAGGGAAATAATTCCACCGGTATTATTG TGGGGTCTGTTTTTGGCGCCCTTTTTATTTGTGGTTTAATAGTGGTATTG GTTATTGTACGGAGGCGAAAATATAACAGCAGCTCTTACAATCGAGACAT CATCACCAGAAAAATATGAATCTGGAAAACCAGCCACTCTGCGATGGGAT GTTACGTACATAGGAGATAAAAATCTCCACTCAATGAGACTAGATGTTTA CCTTCAAGAAAATGGGACGCGAATACTTGTGGGTACCCACGCTGGTGTGG AAAAAGACTTCCCCGATTTTGATACTGAAATCAGTCCAGCATCAAATTCA ATATCAGTCAACGTGACCATTAAAAAACTCAAGTCTGGTGATTTTTACAA CTTCACTTTGGAGGCCGTCGAACAAAAGAAAACACCGCCATTTGAGATTG TCGGCCGACAGGAAAAGGCGATTGTCGTATCTGTCGTATCTGACGTCAAA AATGAAGATTTTTCTAATGAAAGGTCCACGTTATTTGGTTGCCGCCGCCA TTTGTTCATTTTTACAATTCAATGAAGACGGAACGGAGAGAATGGAGGGA ACGAAGAAATGGTGGCGATGTCGAACTGAATCCGACAGGGAAGGATGAAG AGGGAAATAATTCCACCGGTATTATTGTGGGGTCTGTTTTTGGCGCCCTT TTTATTTGTGGTTTAATAGTGGTATTGGTTATTGTACGGAGGCGAAAATA TAACAGCAGCTCTTACAATCGAGACATCATCACCAGAAAAATATGAATCT GGAAAACCAGCCACTCTGCGATGGGATGTTACGTACATAGGAGATAAAAA TCTCCACTCAATGAGACTAGATGTTTACCTTCAAGAAAATGGGACGCGAA TACTTGTGGGTACCCACGCTGGTGTGGAAAAAGACTTCCCCGATTTTGAT ACTGAAATCAGTCCAGCATCAAATTCAATATCAGTCAACGTGACCATTAA AAAACTCAAGTCTGGTGATTTTTACAACTTCACTTTGGAGGCCGTCGAAC AAAAGAAAACACCGCCATTTGAGATTGTCGGCCGACAGGAAAAGGCGATT GTCGTATCTGTCGTATCTGACGTCAAAAATGAAGATTTTTCTAATGAAAG GTCCACGTTATTTGGTTGCCGCCGCCATTTGTTCATTTTTACAATTCAAT GAAGACGGAACGGAGAGAATGGAGGGAACGAAGAAATGGTGGCGATGTCG AACTGAATCCGACAGGGAAGGATGAAGAGGGAAATAATTCCACCGGTATT ATTGTGGGGTCTGTTTTTGGCGCCCTTTTTATTTGTGGTTTAATAGTGGT ATTGGTTATTGTACGGAGGCGAAAATATAACAGCAGCTCTTACAATCGAG ACATCATCACCAGAAAAATATGAATCTGGAAAACCAGCCACTCTGCGATG GGATGTTACGTACATAGGAGATAAAAATCTCCACTCAATGAGACTAGATG TTTACCTTCAAGAAAATGGGACGCGAATACTTGTGGGTACCCACGCTGGT GTGGAAAAAGACTTCCCCGATTTTGATACTGAAATCAGTCCAGCATCAAA TTCAATATCAGTCAACGTGACCATTAAAAAACTCAAGTCTGGTGATTTTT ACAACTTCACTTTGGAGGCCGTCGAACAAAAGAAAACACCGCCATTTGAG ATTGTCGGCCGACAGGAAAAGGCGATTGTCGTATCTGTCGTATCTGACGT CAAAAATGAAGATTTTTCTAATGAAAGGTCCACGTTATTTGGTTGCCGCC GCCATTTGTTCATTTTTACAATTCAATGAAGACGGAACGGAGAGAATGGA GGGAACGAAGAAATGGTGGCGATGTCGAACTGAATCCGACAGGGAAGGAT GAAGAGGGAAATAATTCCACCGGTATTATTGTGGGGTCTGTTTTTGGCGC CCTTTTTATTTGTGGTTTAATAGTGGTATTGGTTATTGTACGGAGGCGAA AATATAACAGCAGCTCTTACAATCGAGACATCATCACCAGAAAAATATGA ATCTGGAAAACCAGCCACTCTGCGATGGGATGTTACGTACATAGGAGATA AAAATCTCCACTCAATGAGACTAGATGTTTACCTTCAAGAAAATGGGACG CGAATACTTGTGGGTACCCACGCTGGTGTGGAAAAAGACTTCCCCGATTT TGATACTGAAATCAGTCCAGCATCAAATTCAATATCAGTCAACGTGACCA TTAAAAAACTCAAGTCTGGTGATTTTTACAACTTCACTTTGGAGGCCGTC GAACAAAAGAAAACACCGCCATTTGAGATTGTCGGCCGACAGGAAAAGGC GATTGTCGTATCTGTCGTATCTGACGTCAAAAATGAAGATTTTTCTAATG AAAGGTCCACGTTATTTGGTTGCCGCCGCCATTTGTTCATTTTTACAATT CAATGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
| TCONS_00040063-exon-sc0002295-1575043694:22379..22483 | TCONS_00040063-exon-sc0002295-1575043694:22379..22483 | Clytia hemisphaerica | exon |
| TCONS_00040063-exon-sc0002295-1575043694:21660..22028 | TCONS_00040063-exon-sc0002295-1575043694:21660..22028 | Clytia hemisphaerica | exon |
| TCONS_00040063-exon-sc0002295-1575043694:19109..19238 | TCONS_00040063-exon-sc0002295-1575043694:19109..19238 | Clytia hemisphaerica | exon |
| TCONS_00040063-exon-sc0002295-1575043694:16696..17211 | TCONS_00040063-exon-sc0002295-1575043694:16696..17211 | Clytia hemisphaerica | exon |
| TCONS_00040063-exon-sc0002295-1510915933:22379..22483 | TCONS_00040063-exon-sc0002295-1510915933:22379..22483 | Clytia hemisphaerica | exon |
| TCONS_00040063-exon-sc0002295-1510915933:21660..22028 | TCONS_00040063-exon-sc0002295-1510915933:21660..22028 | Clytia hemisphaerica | exon |
| TCONS_00040063-exon-sc0002295-1510915933:19109..19238 | TCONS_00040063-exon-sc0002295-1510915933:19109..19238 | Clytia hemisphaerica | exon |
| TCONS_00040063-exon-sc0002295-1510915933:16696..17211 | TCONS_00040063-exon-sc0002295-1510915933:16696..17211 | Clytia hemisphaerica | exon |
| TCONS_00040063-exon-sc0002295-1491911889:22379..22483 | TCONS_00040063-exon-sc0002295-1491911889:22379..22483 | Clytia hemisphaerica | exon |
| TCONS_00040063-exon-sc0002295-1491911889:21660..22028 | TCONS_00040063-exon-sc0002295-1491911889:21660..22028 | Clytia hemisphaerica | exon |
| TCONS_00040063-exon-sc0002295-1491911889:19109..19238 | TCONS_00040063-exon-sc0002295-1491911889:19109..19238 | Clytia hemisphaerica | exon |
| TCONS_00040063-exon-sc0002295-1491911889:16696..17211 | TCONS_00040063-exon-sc0002295-1491911889:16696..17211 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
| sc0002295 | supercontig | sc0002295:16696..22483 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
| IPR013783 | Ig-like_fold |
Blast
The following BLAST results are available for this feature:
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