TCONS_00040061 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040061
Unique NameTCONS_00040061
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length367

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040061 ID=TCONS_00040061|Name=TCONS_00040061|organism=Clytia hemisphaerica|type=transcript|length=367bp
CGGAAGTGTTTCACATGCAAAGGCTCCTTGAGAGACGAACCACTTAAGCC
TCCTCACGATATGGTCTTGGTTCAGCTCAAAGAGCGACCAATGGCAGGTG
GCTCTTGGGCTGACAAAGATTCGTTGATATCGACATCAGTCCACTTCCAT
GCCAAGCCACAATGTGTTAGAAAGCTAGATCCCAAGAAAGTCAAGCTCTC
AAGAGAATTCAACGATCTTGATGATTCGCATCGGGAGCAACTGCGATTTC
TTGGTATCGATATGAATACTTTATACTGGTGATATTGTCTTGTTTTTTAG
TTACATAGTTTTTTAGTGGTTTTTAACAAGTGTATAAACTTAGActtaaa
ctttctttttattctga
Run BLAST on NCBI

transcript from alignment at sc0002294:13815..14181

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040061 ID=TCONS_00040061|Name=TCONS_00040061|organism=Clytia hemisphaerica|type=transcript|length=367bp|location=Sequence derived from alignment at sc0002294:13815..14181 (Clytia hemisphaerica)
tcagaataaaaagaaagtttaagTCTAAGTTTATACACTTGTTAAAAACC
ACTAAAAAACTATGTAACTAAAAAACAAGACAATATCACCAGTATAAAGT
ATTCATATCGATACCAAGAAATCGCAGTTGCTCCCGATGCGAATCATCAA
GATCGTTGAATTCTCTTGAGAGCTTGACTTTCTTGGGATCTAGCTTTCTA
ACACATTGTGGCTTGGCATGGAAGTGGACTGATGTCGATATCAACGAATC
TTTGTCAGCCCAAGAGCCACCTGCCATTGGTCGCTCTTTGAGCTGAACCA
AGACCATATCGTGAGGAGGCTTAAGTGGTTCGTCTCTCAAGGAGCCTTTG
CATGTGAAACACTTCCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024280XLOC_024280Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040061-exon-sc0002294-1491911889:13815..14181TCONS_00040061-exon-sc0002294-1491911889:13815..14181Clytia hemisphaericaexon
TCONS_00040061-exon-sc0002294-1510915933:13815..14181TCONS_00040061-exon-sc0002294-1510915933:13815..14181Clytia hemisphaericaexon
TCONS_00040061-exon-sc0002294-1575043694:13815..14181TCONS_00040061-exon-sc0002294-1575043694:13815..14181Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002294supercontigsc0002294:13815..14181 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.388237	0	0	0	0	0	0.540527	0.189218	0.468754	0	0.445396	0.621564	0	0.959419	0.211897	0	0.172772	0	0	0	0.596409	0.483342	0	1.44649	0.645478	0	0.328591	0.747675	0.741569
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040061 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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