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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00040050 ID=TCONS_00040050|Name=TCONS_00040050|organism=Clytia hemisphaerica|type=transcript|length=1476bp
ctAGGAAAACGATTTTCTTAAAGGATGCACGCCTGTAATCAAATCTGGAA
CCATTACCCTCCACTAAAATTCCGTTGTCAAGAGTATACCACTGACCATT
TTTATCTGATAGAGGATGATTAAAGGAGATTTCTCCTCCAATCTCTAACG
AGGGAATGTGAATGTAATTTTCGAGTTTTTGTATTGTGACTTGTGCAGAA
ATGGGCTTTATATCTATAAAATCATGAGCTAAGGTATGCTTTGTTTCCCA
AAGAATCAAGTCATTAGGTTCGTCTGAGGGATAGTGGTATTGAATGGGAA
CAGAAAGGTTTTTGGTAACATACAAGGAATCTTTGGTGAGGATTTGATTT
ATGAGATCAGAATCTCCAATGAGTTTAGCAGAATATTCACGAAGAAAAAG
ATGGGGCGTGTAGATGGTCCAAGAACCACCAAACAAGGTGCACTTTTTCA
CTGGCTTAGGTCGATTCAACCACATTGTTCCTCTTTTATATAAAGTCTCC
TTGTAATATCCTGTAGTTCTCTTCAAAAGAAGCATATCCTTACAATAGTC
TTTTCGAGGACGGGGATCATTCTTAACTGTTACTTTACTATGACCAGTCA
TGGTATCGCAGTCAGTGACCAGATACCATATAGTACAAAGGTATATCTTA
AATTTGGTGACCGTAGGATTATACTTAAGAACTCTTCCCTTGAAGGACTC
TAGCTTTTGGGTTTTCTTTTCTATGTTCTCACAAGACTGAATGTCAGGCA
ACGCAAAGAAACCTAACTTAGTAACATGTTGACAATTCGTCAATTCACCA
ACTGAAAAACAGCCCTCTGGGTTTTGATTCGAAGTCGCTCCGGGAAACAG
CACTGCAACGAACAGGAACGTTATTGACGAAACGATCAGATCACTCCTCC
TAAAATaaaattaggtaaaaaaaattctcttaatTCAAACCACACATTAT
TGTAAGTAGTCTCCTCACTCATCCCTTCGCTCATTCTTCTTTGCTTTGAC
GTCCTGCGCGAGGGCGTCCTTTTCGTATTTCAACCTTTTCTGCAGCTCAG
CCAGTGGAATATCGTCTTCCTCTTCCCAGTCGgattcttcaatttcttct
tcctGGTCTTGAGATTGAGCCACAGGTGGATCTCCGTTATGGGGTTTTAT
TCTGTCGTGATGTACTAAactctttaaaatttttccatttggtgttttta
atttgtaatttaCCGGTGGGAAAACCTCGATGATTTCGTGGGGGCCagag
aacttttgcaaaaactTGGATGATCTGCCCTTTTGCTTTTTGTGACTGGT
AAGCCATACATATGAACCAACTGGGTACTGAATGAAATTTTCGTTTTCGG
CGTCGTTCTCGGCTTTTACTTTGGATTTGGTGATTTCCTGGATAGCAATT
CTCTTGGCGTGTTCCAGGCTGGAATTCAGACGCTGCATATAGTCATTAGT
ATCCAGGGTCAGTACTTCGCTGGGTA Run BLAST on NCBI protein sequence of TCONS_00040050-protein >TCONS_00040050-protein ID=TCONS_00040050-protein|Name=TCONS_00040050-protein|organism=Clytia hemisphaerica|type=polypeptide|length=200bp
MTGHSKVTVKNDPRPRKDYCKDMLLLKRTTGYYKETLYKRGTMWLNRPKP
VKKCTLFGGSWTIYTPHLFLREYSAKLIGDSDLINQILTKDSLYVTKNLS
VPIQYHYPSDEPNDLILWETKHTLAHDFIDIKPISAQVTIQKLENYIHIP
SLEIGGEISFNHPLSDKNGQWYTLDNGILVEGNGSRFDYRRASFKKIVFL Run BLAST on NCBI transcript from alignment at sc0002288:16963..18438 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00040050 ID=TCONS_00040050|Name=TCONS_00040050|organism=Clytia hemisphaerica|type=transcript|length=1476bp|location=Sequence derived from alignment at sc0002288:16963..18438 (Clytia hemisphaerica)
TACCCAGCGAAGTACTGACCCTGGATACTAATGACTATATGCAGCGTCTG
AATTCCAGCCTGGAACACGCCAAGAGAATTGCTATCCAGGAAATCACCAA
ATCCAAAGTAAAAGCCGAGAACGACGCCGAAAACGAAAATTTCATTCAGT
ACCCAGTTGGTTCATATGTATGGCTTACCAGTCACAAAAAGCAAAAGGGC
AGATCATCCAagtttttgcaaaagttctctGGCCCCCACGAAATCATCGA
GGTTTTCCCACCGGtaaattacaaattaaaaacaccaaatggaaaaattt
taaagagtTTAGTACATCACGACAGAATAAAACCCCATAACGGAGATCCA
CCTGTGGCTCAATCTCAAGACCaggaagaagaaattgaagaatcCGACTG
GGAAGAGGAAGACGATATTCCACTGGCTGAGCTGCAGAAAAGGTTGAAAT
ACGAAAAGGACGCCCTCGCGCAGGACGTCAAAGCAAAGAAGAATGAGCGA
AGGGATGAGTGAGGAGACTACTTACAATAATGTGTGGTTTGAattaagag
aattttttttacctaattttATTTTAGGAGGAGTGATCTGATCGTTTCGT
CAATAACGTTCCTGTTCGTTGCAGTGCTGTTTCCCGGAGCGACTTCGAAT
CAAAACCCAGAGGGCTGTTTTTCAGTTGGTGAATTGACGAATTGTCAACA
TGTTACTAAGTTAGGTTTCTTTGCGTTGCCTGACATTCAGTCTTGTGAGA
ACATAGAAAAGAAAACCCAAAAGCTAGAGTCCTTCAAGGGAAGAGTTCTT
AAGTATAATCCTACGGTCACCAAATTTAAGATATACCTTTGTACTATATG
GTATCTGGTCACTGACTGCGATACCATGACTGGTCATAGTAAAGTAACAG
TTAAGAATGATCCCCGTCCTCGAAAAGACTATTGTAAGGATATGCTTCTT
TTGAAGAGAACTACAGGATATTACAAGGAGACTTTATATAAAAGAGGAAC
AATGTGGTTGAATCGACCTAAGCCAGTGAAAAAGTGCACCTTGTTTGGTG
GTTCTTGGACCATCTACACGCCCCATCTTTTTCTTCGTGAATATTCTGCT
AAACTCATTGGAGATTCTGATCTCATAAATCAAATCCTCACCAAAGATTC
CTTGTATGTTACCAAAAACCTTTCTGTTCCCATTCAATACCACTATCCCT
CAGACGAACCTAATGACTTGATTCTTTGGGAAACAAAGCATACCTTAGCT
CATGATTTTATAGATATAAAGCCCATTTCTGCACAAGTCACAATACAAAA
ACTCGAAAATTACATTCACATTCCCTCGTTAGAGATTGGAGGAGAAATCT
CCTTTAATCATCCTCTATCAGATAAAAATGGTCAGTGGTATACTCTTGAC
AACGGAATTTTAGTGGAGGGTAATGGTTCCAGATTTGATTACAGGCGTGC
ATCCTTTAAGAAAATCGTTTTCCTag Coding sequence (CDS) from alignment at sc0002288:16963..18438 >TCONS_00040050 ID=TCONS_00040050|Name=TCONS_00040050|organism=Clytia hemisphaerica|type=CDS|length=600bp|location=Sequence derived from alignment at sc0002288:16963..18438 (Clytia hemisphaerica)
ATGACTGGTCATAGTAAAGTAACAGTTAAGAATGATCCCCGTCCTCGAAA
AGACTATTGTAAGGATATGCTTCTTTTGAAGAGAACTACAGGATATTACA
AGGAGACTTTATATAAAAGAGGAACAATGTGGTTGAATCGACCTAAGCCA
GTGAAAAAGTGCACCTTGTTTGGTGGTTCTTGGACCATCTACACGCCCCA
TCTTTTTCTTCGTGAATATTCTGCTAAACTCATTGGAGATTCTGATCTCA
TAAATCAAATCCTCACCAAAGATTCCTTGTATGTTACCAAAAACCTTTCT
GTTCCCATTCAATACCACTATCCCTCAGACGAACCTAATGACTTGATTCT
TTGGGAAACAAAGCATACCTTAGCTCATGATTTTATAGATATAAAGCCCA
TTTCTGCACAAGTCACAATACAAAAACTCGAAAATTACATTCACATTCCC
TCGTTAGAGATTGGAGGAGAAATCTCCTTTAATCATCCTCTATCAGATAA
AAATGGTCAGTGGTATACTCTTGACAACGGAATTTTAGTGGAGGGTAATG
GTTCCAGATTTGATTACAGGCGTGCATCCTTTAAGAAAATCGTTTTCCTa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00040050-exon-sc0002288-1491911889:16963..18438 | TCONS_00040050-exon-sc0002288-1491911889:16963..18438 | Clytia hemisphaerica | exon |
| TCONS_00040050-exon-sc0002288-1510915933:16963..18438 | TCONS_00040050-exon-sc0002288-1510915933:16963..18438 | Clytia hemisphaerica | exon |
| TCONS_00040050-exon-sc0002288-1575043694:16963..18438 | TCONS_00040050-exon-sc0002288-1575043694:16963..18438 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002288 | supercontig | sc0002288:16963..18438 . |
Blast
The following BLAST results are available for this feature:
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