TCONS_00040044 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040044
Unique NameTCONS_00040044
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length497

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040044 ID=TCONS_00040044|Name=TCONS_00040044|organism=Clytia hemisphaerica|type=transcript|length=497bp
CGAACCCACGTTTTGTCTATTCCTTTGCCGTTCAGTTTCTTCTCAGGAAG
TGTGTGCCATCGACAGCAGATAGAAAATCCTGGACATAATGTTTTTAGCT
CAAAGATGAAAATTATCAACCAACATCTTCAATCCTGCGGTTGCCATCTT
GCCGACATCTTTTGTTGGTTTTGGGGGCCTGCTTTCGAGATTCATTTGCA
AATCGTCAACGGAGATTGCAGGGATTTGAAGTCATCACCCTCGCAGTGGT
CTTGTCCAGTCCTCGATTCGTTATATGCCTGGATGACCTCACTCAGCATC
GAACCGGATGATGGTATTATCGAACCCAAATTTGTTAAAACTTCTCGTGT
GTTCTGTGGCGTGGATTTCAAATGTGTCGGTCGGTGGATGATGGCTGCGA
TGTCAAGTGATTCGTCAACGTTTCCAGTTATCGCGTCTATCTTCTCTGTC
ATGTTAATGCTGTCATCATTGTCAGTGAAGGTCAATTTATTACAGTC
Run BLAST on NCBI

protein sequence of TCONS_00040044-protein

>TCONS_00040044-protein ID=TCONS_00040044-protein|Name=TCONS_00040044-protein|organism=Clytia hemisphaerica|type=polypeptide|length=165bp
RTHVLSIPLPFSFFSGSVCHRQQIENPGHNVFSSKMKIINQHLQSCGCHL
ADIFCWFWGPAFEIHLQIVNGDCRDLKSSPSQWSCPVLDSLYAWMTSLSI
EPDDGIIEPKFVKTSRVFCGVDFKCVGRWMMAAMSSDSSTFPVIASIFSV
MLMLSSLSVKVNLLQ
Run BLAST on NCBI

transcript from alignment at sc0002287:6386..9053-

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040044 ID=TCONS_00040044|Name=TCONS_00040044|organism=Clytia hemisphaerica|type=transcript|length=2668bp|location=Sequence derived from alignment at sc0002287:6386..9053- (Clytia hemisphaerica)
CGAACCCACGTTTTGTCTATTCCTTTGCCGTTCAGTTTCTTCTCAGGAAG
TGTGTGCCATCGACAGCAGATAGAAAATCCTGGACATAATGTTTTTAGCT
CAAAGTAAGTTGAAATCAACTTCTCTTTTCGATTTAATGGTTTGCAATTT
GAATGAACGTCAAGAGCAGCCACCTTCTCGAGGTCCTTTTCTCCTGAAAA
ATCTGACATCTGGTTGTGTTTTTCACAAGTATAGCTCCTGGATTTTTTTA
ACAGATTGTCCGCTGGAAAATTGTATGTGTTTTTCCTTAAAATGTGCTCC
TGGATTTTATGAACAGTCTTTTAGAGTCTTTTAAGGCGACCCCTGGATTT
TACCTGAGTGTTTAGAGGAAAGTCTCAGCAGCTGCTTTTGGAACCTTTGC
GGATCATTGATTCAAAATATACAGACTAACGAATCATAACTCTACAAGTT
TTGGCACTATTTCAATTAACATCGAAACATTAACAATCTTACACTGGAAT
AAATGTGCTATTCTTTTTGGAAGAGGCCATTTTAACTTATCATAGAGGGA
CAATCATGGACGACATGGATTTTCCGTAGCATTTTTCTTTTGAGAAACTT
CAGGATTTCTGTAACATTTTCAGGATTTTACGAGAAAATAAAGCAAATTT
TATGGATTTTCTGATACATATGCACTAAGTAATGGGAAAAAAATCCTGGA
TTTTCCAAAACTTTTTTCAAATTTCTCAAGATTTCCAAGTGAAAAATAAA
TCTAAAAAACCTTGTTGTCCACAGGGGTTAATGATATTTTTCTGGAACTG
CCCAGTGCAACTAAATACTTCGTAAAAGCCACCTTTTGAAATTTCTTGAC
CTCAAACCAGCTGTTGCAACCGTAAATCGAAATGTCACAAAATGAATTCA
TTTGATTGATATAGACAAGAAATGTGAATCAAAGCTGTGATGCGACAATA
ATAGAATTGTTTTTCTTGCAGAACAAACTTAAAAAAAATTATTTCAACAA
GAACATGATATTCTAATTAAAGAACATAACACAATTATGAAATGTTGTAA
AAAATGGAAAAAATATCTGTCCTGTACGTATAATTGTAATGCATATTTAT
CCTTGTTAGCTATAACTTTCTCAAAGTAGAAGTTATTGATTGAAGCTAAA
ATTCAGAATCTAAAAGGCACTTATTACAGTCAAAAGCACCCAATTTTAGG
CAAAAATTAACCAGATTAATCATAATTGTAGTTTATTCCTGCTACCAGTT
TCAAATTTTTAGATTAGACGAAATAAGTTCCCCCAAAATATTTAATCTGC
CTTATTTGAACAGGCCTAAAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNTTAAATTTTTTTTCTATATTATT
TTAATTTTTCCTGTATTTTTGATAAATTTTTTTTCTATATTATTTTAATT
TTTCCTGTATTTTTGACTCAAGTGTCGACATGTCATAATCCTGTTCTAGT
TCAAAATCGTTTTTTAACTTCTTGTAAATCTCTGCCACCTTATCAGGATT
GAGTTTTTCAAATCCATGCCAGCCCTTTAAATTACACGCTTTTAATTCTT
CAGGATGAAAATTATCAACCAACATCTTCAATCCTGCGGTTGCCATCTTG
CCGACATCTTTTGTTGGTTTTGGGGGCCTGCTTTCGAGATTCATTTGCAA
ATCGTCAACGGAGATTGCAGGTAAAGTGTCCTCACCAGTGAAGATAAGTG
GGTTGCGTTCAATAGCAGTCTTTATGTCTTTTAGTTGAGACATAATTTCA
GTGTTCATGTTTGCTACAACATTTTTGAGAGAGATGACTTCTTCTTTTAA
TTCGCTATTTTCGATCTTTAAAGCAAATACTTCCATTTTCAGGGATTTGA
AGTCATCACCCTCGCAGTGGTCTTGTCCAGTCCTCGATTCGTTATATGCC
TGGATGACCTCACTCAGCATCGAACCGGATGATGGTATTATCGAACCCAA
ATTTGTTAAAACTTCTCGTGTGTTCTGTGGCGTGGATTTCAAATGTGTCG
GTCGGTGGATGATGGCTGCGATGTCAAGTGATTCGTCAACGTTTCCAGTT
ATCGCGTCTATCTTCTCTGTCATGTTAATGCTGTCATCATTGTCAGTGAA
GGTCAATTTATTACAGTC

Coding sequence (CDS) from alignment at sc0002287:6386..9053-

>TCONS_00040044 ID=TCONS_00040044|Name=TCONS_00040044|organism=Clytia hemisphaerica|type=CDS|length=1485bp|location=Sequence derived from alignment at sc0002287:6386..9053- (Clytia hemisphaerica)
GGATTTGAAGTCATCACCCTCGCAGTGGTCTTGTCCAGTCCTCGATTCGT
TATATGCCTGGATGACCTCACTCAGCATCGAACCGGATGATGGTATTATC
GAACCCAAATTTGTTAAAACTTCTCGTGTGTTCTGTGGCGTGGATTTCAA
ATGTGTCGGTCGGTGGATGATGGCTGCGATGTCAAGTGATTCGTCAACGT
TTCCAGTTATCGCGTCTATCTTCTCTGTCATGTTAATGCTGTCATCATTG
TCAGTGAAGGTCAATTTATTACAGGATGAAAATTATCAACCAACATCTTC
AATCCTGCGGTTGCCATCTTGCCGACATCTTTTGTTGGTTTTGGGGGCCT
GCTTTCGAGATTCATTTGCAAATCGTCAACGGAGATTGCAGCGAACCCAC
GTTTTGTCTATTCCTTTGCCGTTCAGTTTCTTCTCAGGAAGTGTGTGCCA
TCGACAGCAGATAGAAAATCCTGGACATAATGTTTTTAGCTCAAAGGATT
TGAAGTCATCACCCTCGCAGTGGTCTTGTCCAGTCCTCGATTCGTTATAT
GCCTGGATGACCTCACTCAGCATCGAACCGGATGATGGTATTATCGAACC
CAAATTTGTTAAAACTTCTCGTGTGTTCTGTGGCGTGGATTTCAAATGTG
TCGGTCGGTGGATGATGGCTGCGATGTCAAGTGATTCGTCAACGTTTCCA
GTTATCGCGTCTATCTTCTCTGTCATGTTAATGCTGTCATCATTGTCAGT
GAAGGTCAATTTATTACAGGATGAAAATTATCAACCAACATCTTCAATCC
TGCGGTTGCCATCTTGCCGACATCTTTTGTTGGTTTTGGGGGCCTGCTTT
CGAGATTCATTTGCAAATCGTCAACGGAGATTGCAGCGAACCCACGTTTT
GTCTATTCCTTTGCCGTTCAGTTTCTTCTCAGGAAGTGTGTGCCATCGAC
AGCAGATAGAAAATCCTGGACATAATGTTTTTAGCTCAAAGGATTTGAAG
TCATCACCCTCGCAGTGGTCTTGTCCAGTCCTCGATTCGTTATATGCCTG
GATGACCTCACTCAGCATCGAACCGGATGATGGTATTATCGAACCCAAAT
TTGTTAAAACTTCTCGTGTGTTCTGTGGCGTGGATTTCAAATGTGTCGGT
CGGTGGATGATGGCTGCGATGTCAAGTGATTCGTCAACGTTTCCAGTTAT
CGCGTCTATCTTCTCTGTCATGTTAATGCTGTCATCATTGTCAGTGAAGG
TCAATTTATTACAGGATGAAAATTATCAACCAACATCTTCAATCCTGCGG
TTGCCATCTTGCCGACATCTTTTGTTGGTTTTGGGGGCCTGCTTTCGAGA
TTCATTTGCAAATCGTCAACGGAGATTGCAGCGAACCCACGTTTTGTCTA
TTCCTTTGCCGTTCAGTTTCTTCTCAGGAAGTGTGTGCCATCGACAGCAG
ATAGAAAATCCTGGACATAATGTTTTTAGCTCAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024264XLOC_024264Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040044-proteinTCONS_00040044-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040044-exon-sc0002287-1575043694:8950..9053TCONS_00040044-exon-sc0002287-1575043694:8950..9053Clytia hemisphaericaexon
TCONS_00040044-exon-sc0002287-1575043694:6834..6950TCONS_00040044-exon-sc0002287-1575043694:6834..6950Clytia hemisphaericaexon
TCONS_00040044-exon-sc0002287-1575043694:6386..6661TCONS_00040044-exon-sc0002287-1575043694:6386..6661Clytia hemisphaericaexon
TCONS_00040044-exon-sc0002287-1510915933:8950..9053TCONS_00040044-exon-sc0002287-1510915933:8950..9053Clytia hemisphaericaexon
TCONS_00040044-exon-sc0002287-1510915933:6834..6950TCONS_00040044-exon-sc0002287-1510915933:6834..6950Clytia hemisphaericaexon
TCONS_00040044-exon-sc0002287-1510915933:6386..6661TCONS_00040044-exon-sc0002287-1510915933:6386..6661Clytia hemisphaericaexon
TCONS_00040044-exon-sc0002287-1491911889:8950..9053TCONS_00040044-exon-sc0002287-1491911889:8950..9053Clytia hemisphaericaexon
TCONS_00040044-exon-sc0002287-1491911889:6834..6950TCONS_00040044-exon-sc0002287-1491911889:6834..6950Clytia hemisphaericaexon
TCONS_00040044-exon-sc0002287-1491911889:6386..6661TCONS_00040044-exon-sc0002287-1491911889:6386..6661Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002287supercontigsc0002287:6386..9053 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.440203	0.322657	0.278956	0.136458	0.489258	0	0.190788	0.677391	1.97454	0.603246	0	0.95808	1.02177	2.21305	0.0699494	0.342362	0.975057	0	0	0	0.238208	0	1.26918	1.2074	0.176872	0.140692	0	0	0.570733	1.55922
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040044 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top