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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00040040 ID=TCONS_00040040|Name=TCONS_00040040|organism=Clytia hemisphaerica|type=transcript|length=988bp
TTAGATGTCAGTATATCATGAAAGGTCTGAATTGAAACTCTTGTGTGGCC
GATTGAGACCTTGCAAGGTTTCCATTCAAGCAAGGTCTTGTTCTTTACAC
CAAAAAGgtctcctttgtattttcgaAATAAGACCTTCATGGTCTGTTTT
TGGAAAAGGTCTTATTCAACACTTCTAAAGGTCTCAATCACGCGTTTCAA
ACAAGACCTTATTAGGTCTGCCTGATACAAGCCttttcaatagacacgat
aGTGAACATCCGATAGACAAGATAAGAGGGCTTTTATGGAGACCTCTAAA
GGTCTCAATTTCGCGCGCTGTAAAAGGTCGTTAAAAAGGTCTCCTTCAAG
ACTTCTATAGGCTCACTGGTTTGAAACAAGACCTTTTCAGGTCTGCCATT
TACAAGCCttttcaatagacacgataGTGAACATCCAATAGACACGATAA
AAAGGGCTTTTATGAAGATCTCTAAAGGTCTCGATTTCGCGCGCTTTAAA
AAATCTAGAGCAGTGTAACGACTTCTTtcgaattttcgaatgttttgaac
gtcgttcgaaattcgaaaagttcaaaattggatcaAAGTGCAAAAGTaca
atcaaaacaattttggaGCCAAAAGGGTGAAGACGGTCTGAAGATAGTCT
GAAAagcgaaaagaaaaaaagCTCCGACATTAACGAGAATCTAACCCAAC
ATCATGTGAGCCCATGTCACTGTCGCTGTAAATCCCACCATCACATTTTC
TAAACGTTTGTTTAAAGTATGGCCAGAACAAAATCGACTCTCTGCTGAGG
TAAGAATTGAATATATATTTGcccaatttgttttttttttttttctggaa
aactttgaagagctggatcaaaagtaaagaatttttcaaattttctaaat
gacATTTCGATGAAGtaataggcctaaaaaccagttttgtgATCTTTATC
TCACTTCTCTTAAATTTTTTAGCACGCAGCTATCCAGC Run BLAST on NCBI transcript from alignment at sc0002283:17653..18898- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00040040 ID=TCONS_00040040|Name=TCONS_00040040|organism=Clytia hemisphaerica|type=transcript|length=1246bp|location=Sequence derived from alignment at sc0002283:17653..18898- (Clytia hemisphaerica)
TTAGATGTCAGTATATCATGAAAGGTCTGAATTGAAACTCTTGTGTGGCC
GATTGAGACCTTGCAAGGTTTCCATTCAAGCAAGGTCTTGTTCTTTACAC
CAAAAAGGTCTCCTTTGTATTTTCGAAATAAGACCTTCATGGTCTGTTTT
TGGAAAAGGTCTTATTCAACACTTCTAAAGGTCTCAATCACGCGTTTCAA
ACAAGACCTTATTAGGTCTGCCTGATACAAGCCTTTTCAATAGACACGAT
AGTGAACATCCGATAGACAAGATAAGAGGGCTTTTATGGAGACCTCTAAA
GGTCTCAATTTCGCGCGCTGTAAAAGGTCGTTAAAAAGGTCTCCTTCAAG
ACTTCTATAGGCTCACTGGTTTGAAACAAGACCTTTTCAGGTCTGCCATT
TACAAGCCTTTTCAATAGACACGATAGTGAACATCCAATAGACACGATAA
AAAGGGCTTTTATGAAGATCTCTAAAGGTCTCGATTTCGCGCGCTTTAAA
AAATCTAGAGCAGTGTAACGACTTCTTTCGAATTTTCGAATGTTTTGAAC
GTCGTTCGAAATTCGAAAAGTTCAAAATTGGATCAAAGTGCAAAAGTACA
ATCAAAACAATTTTGGAGCCAAAAGGGTGAAGACGGTCTGAAGATAGTCT
GAAAAGCGAAAAGAAAAAAAGGTAAGTAACACAATCTTCACGTAATAAAA
TTTCTTTTTTTGTCAACTGGAGCTATATATCTTTTGATCGGATGAATCCT
TTTTTCTTCCACAAACATGGAGCTTTATTGTTGCAAATACACCCATGGAA
AGTTTTGTCGAGGCTCGATCGAATTTTGTTCTTGTATTTATTGATTCTAC
TAGCTAGGCTTTTACGAAATTTTATTTTATTTTTTGTGCAATATTTGTTT
TAAATCTTTTATTGTATTAATTTTTTCAGCTCCGACATTAACGAGAATCT
AACCCAACATCATGTGAGCCCATGTCACTGTCGCTGTAAATCCCACCATC
ACATTTTCTAAACGTTTGTTTAAAGTATGGCCAGAACAAAATCGACTCTC
TGCTGAGGTAAGAATTGAATATATATTTGCCCAATTTGTTTTTTTTTTTT
TTCTGGAAAACTTTGAAGAGCTGGATCAAAAGTAAAGAATTTTTCAAATT
TTCTAAATGACATTTCGATGAAGTAATAGGCCTAAAAACCAGTTTTGTGA
TCTTTATCTCACTTCTCTTAAATTTTTTAGCACGCAGCTATCCAGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00040040-exon-sc0002283-1575043694:18228..18898 | TCONS_00040040-exon-sc0002283-1575043694:18228..18898 | Clytia hemisphaerica | exon |
| TCONS_00040040-exon-sc0002283-1575043694:17653..17969 | TCONS_00040040-exon-sc0002283-1575043694:17653..17969 | Clytia hemisphaerica | exon |
| TCONS_00040040-exon-sc0002283-1510915933:18228..18898 | TCONS_00040040-exon-sc0002283-1510915933:18228..18898 | Clytia hemisphaerica | exon |
| TCONS_00040040-exon-sc0002283-1510915933:17653..17969 | TCONS_00040040-exon-sc0002283-1510915933:17653..17969 | Clytia hemisphaerica | exon |
| TCONS_00040040-exon-sc0002283-1491911889:18228..18898 | TCONS_00040040-exon-sc0002283-1491911889:18228..18898 | Clytia hemisphaerica | exon |
| TCONS_00040040-exon-sc0002283-1491911889:17653..17969 | TCONS_00040040-exon-sc0002283-1491911889:17653..17969 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002283 | supercontig | sc0002283:17653..18898 - |
Blast
The following BLAST results are available for this feature:
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