TCONS_00040033 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040033
Unique NameTCONS_00040033
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length846

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040033 ID=TCONS_00040033|Name=TCONS_00040033|organism=Clytia hemisphaerica|type=transcript|length=846bp
NCTAACTTTTCGATGTCGTGGGTATTACAATGTCCAAGAATTTTGTGCca
catttcaaggctttctcGTCGGTTTTGGGATGAATAAGATTTATAGAGGT
AATATAGACGATTTCTCTCTTCGATTTGGAATACGGTAATATCTGGAGTA
ATGAGTTCTGCATACTGTTCATAGAATCTCACTGATGCTCCGAATTTGGT
TGCTGCTCTAgcagaaaatatattttgggGGAATGAGGATATGTAGAGTA
CATCTCTCAGTTGAACATTGACAGTTTCCCCTTCTTTCGTCACAAGTTTC
ACGATAACAGTTCCTCTCTTTAATGCAATGTTATTAACTCGACTTCCATC
AGCAAGTTCGATGTGGTGGTTTGCTGGGTTGAAGGTGGGGTCCTCCTCAA
TGAAGCCATCATCATGGTTAATTATATGGGTTCATATATAGCCATTATAG
TGGCTCCACAGTCTACTAAAAAGTTCTCACCACTAGCATACGTGTTTCGG
TTATCGCTGGCtttaaaaatgaatgaaaacgaATGTTCATTACCGTCATT
GCTGGGTACGGAAGCTGCAGTTTTGGAGTGGTCATTTGTTGGTTTGGttt
cattttgttgtttctttctACACGACTGGTTGGTATGGGATGATGATCTG
CAGGTACTACACCATTTCTTTTTTGGTTTACGGCATTCAAACGCTCTATG
TCCCGCAATACCGCAATTGTAACAAGTGAACGTTTTTGAGTCCCTCGTTT
TCAATACAGATTCTTTGGTACTCTTTTCGGTCGATGAACGAATTAACTCT
ATTTCCTCGAAATTTCTGAGGGTTTGCTTGAACTTGAGAAACGTAT
Run BLAST on NCBI

transcript from alignment at sc0002274:8215..9617-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040033 ID=TCONS_00040033|Name=TCONS_00040033|organism=Clytia hemisphaerica|type=transcript|length=1403bp|location=Sequence derived from alignment at sc0002274:8215..9617- (Clytia hemisphaerica)
NCTAACTTTTCGATGTCGTGGGTATTACAATGTCCAAGAATTTTGTGCCA
CATTTCAAGGCTTTCTCGTCGGTTTTGGGATGAATAAGATTTATAGAGGT
AATATAGACGATTTCTCTCTTCGATTTGGAATACGGTAATATCTGGAGTA
ATGAGTTCTGCATACTGTTCATAGAATCTCACTGATGCTCCGAATTTGGT
TGCTGCTCTAGCAGAAAATATATTTTGGGGGAATGAGGATATGTAGAGTA
CATCTCTCAGTTGAACATTGACAGTTTCCCCTTCTTTCGTCACAAGTTTC
ACGATAACAGTTCCTCTCTTTAATGCAATGTTATTAACTCGACTTCCATC
AGCAAGTTCGATGTGGTGGTTTGCTGGGTTGAAGGTGGGGTCCTCCTCAA
TGAAGCCATCATCATGGTTAATTATATGGGTTCATATATAGCCATTATAG
TGGCTCCACAGTCTACTAAAAAGTTCTCACCACTAGCATACGTGTTTCGG
TTATCGCTGGCTTTAAAAATGAATGAAAACGAATGTTCATTACCGTCATT
GCTGGGTACGGAAGCTGCAGTTTTGGAGTGGTCATGTCCCGCAATACCGC
AATTGTAACAAGTGAACGTTTTTGAGTCTCTCGTTTTCAATACAGATTCT
TTGGTACTCTTTTCGGTCGATGAACGAATTAACTCTATTTCCTCGAAATT
TCTGAGGGTTTGCTTGAANNNNNNNNNNNNNNNNNNNNNNNNCGTTTTCA
ATACAGATTCTTTGGTACTCTTTTCGGTCGATGAACGAATTAACTCTATT
TCCTCGAAATTTCTGAGGGTTTGCTTGAACTTGAGAAACGTATCAACTTT
TTCTGACTGGGTGATAAGGGCGACAAAAGGTTTGTATTCGTCAGATAAAC
CTTTCAAGACCATAGCAATTAACAAAGCATCACTTATCTGTTCATTAGCA
GACCGCAATGACATGGCTGCTTTTTCTGCTCTCATAAGGTAATCTGTTAT
GTTCTCGTTCTTTCCTTTTTGTAACGTTGTTAATTGGTTGTACAATATAA
TAACTCTTGGTTTGCTATCACCAGCATAAAATTCTCGAAGAATCTTGAAC
GCCTTTCGACCATTATCTTTTGCTTCCCTGATGACTAGNCAGTTGTTGGT
TTGGTTTCATTTTGTTGTTTCTTTCTACACGACTGGTTGGTATGGGATGA
TGATCTGCAGGTACTACACCATTTCTTTTTTGGTTTACGGCATTCAAACG
CTCTATGTCCCGCAATACCGCAATTGTAACAAGTGAACGTTTTTGAGTCC
CTCGTTTTCAATACAGATTCTTTGGTACTCTTTTCGGTCGATGAACGAAT
TAACTCTATTTCCTCGAAATTTCTGAGGGTTTGCTTGAACTTGAGAAACG
TAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024253XLOC_024253Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040033-exon-sc0002274-1575043694:9033..9617TCONS_00040033-exon-sc0002274-1575043694:9033..9617Clytia hemisphaericaexon
TCONS_00040033-exon-sc0002274-1575043694:8215..8475TCONS_00040033-exon-sc0002274-1575043694:8215..8475Clytia hemisphaericaexon
TCONS_00040033-exon-sc0002274-1510915933:9033..9617TCONS_00040033-exon-sc0002274-1510915933:9033..9617Clytia hemisphaericaexon
TCONS_00040033-exon-sc0002274-1510915933:8215..8475TCONS_00040033-exon-sc0002274-1510915933:8215..8475Clytia hemisphaericaexon
TCONS_00040033-exon-sc0002274-1491911889:9033..9617TCONS_00040033-exon-sc0002274-1491911889:9033..9617Clytia hemisphaericaexon
TCONS_00040033-exon-sc0002274-1491911889:8215..8475TCONS_00040033-exon-sc0002274-1491911889:8215..8475Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002274supercontigsc0002274:8215..9617 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.491568	0	0	0.424226	0.551247	0	1.00574	0.49587	0.967276	0	0.934612	8.82261e-09	0.444684	0.0267421	0.505861	1.28504	0.456922	0.706801	0.692649	0.892329	0	0.0879721	0	0	0.623837	0	0.0511246	0	0.204361
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001878Znf_CCHC
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040033 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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