TCONS_00040023 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040023
Unique NameTCONS_00040023
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length324

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040023 ID=TCONS_00040023|Name=TCONS_00040023|organism=Clytia hemisphaerica|type=transcript|length=324bp
GTGGAAAAGCTCTTGATTGGTTTCGATCATTTCTCACTGATAGATCACAG
TTCGTTTCAGTCTCTGGTAAAATTTCTACTTCTAAAAATATGAAACATGG
TGTCCCTCAAGGCTCTGTTTTAGGCCCActtctttttctcctttatGTGA
ATGATCTCCATATTGCACTTCGATATGCTTTGGTTAATTTGTTTGCTGAT
GACACTatgcttttttttaagaacgaATCCTTGAAACCGATCGCTAAGCA
AGCCAATATCGATCTAAAGCTTCTTATGAATTGgcttaaagcaaataaaa
tctcTCTCAACACTAGTAAAACTG
Run BLAST on NCBI

protein sequence of TCONS_00040023-protein

>TCONS_00040023-protein ID=TCONS_00040023-protein|Name=TCONS_00040023-protein|organism=Clytia hemisphaerica|type=polypeptide|length=107bp
GKALDWFRSFLTDRSQFVSVSGKISTSKNMKHGVPQGSVLGPLLFLLYVN
DLHIALRYALVNLFADDTMLFFKNESLKPIAKQANIDLKLLMNWLKANKI
SLNTSKT
Run BLAST on NCBI

transcript from alignment at sc0002271:14222..14545

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040023 ID=TCONS_00040023|Name=TCONS_00040023|organism=Clytia hemisphaerica|type=transcript|length=324bp|location=Sequence derived from alignment at sc0002271:14222..14545 (Clytia hemisphaerica)
CAGTTTTACTAGTGTTGAGAgagattttatttgctttaagcCAATTCATA
AGAAGCTTTAGATCGATATTGGCTTGCTTAGCGATCGGTTTCAAGGATtc
gttcttaaaaaaaagcatAGTGTCATCAGCAAACAAATTAACCAAAGCAT
ATCGAAGTGCAATATGGAGATCATTCACataaaggagaaaaagaagTGGG
CCTAAAACAGAGCCTTGAGGGACACCATGTTTCATATTTTTAGAAGTAGA
AATTTTACCAGAGACTGAAACGAACTGTGATCTATCAGTGAGAAATGATC
GAAACCAATCAAGAGCTTTTCCAC

Coding sequence (CDS) from alignment at sc0002271:14222..14545

>TCONS_00040023 ID=TCONS_00040023|Name=TCONS_00040023|organism=Clytia hemisphaerica|type=CDS|length=321bp|location=Sequence derived from alignment at sc0002271:14222..14545 (Clytia hemisphaerica)
AGTTTTACTAGTGTTGAGAgagattttatttgctttaagcCAATTCATAA
GAAGCTTTAGATCGATATTGGCTTGCTTAGCGATCGGTTTCAAGGATtcg
ttcttaaaaaaaagcatAGTGTCATCAGCAAACAAATTAACCAAAGCATA
TCGAAGTGCAATATGGAGATCATTCACataaaggagaaaaagaagTGGGC
CTAAAACAGAGCCTTGAGGGACACCATGTTTCATATTTTTAGAAGTAGAA
ATTTTACCAGAGACTGAAACGAACTGTGATCTATCAGTGAGAAATGATCG
AAACCAATCAAGAGCTTTTCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024246XLOC_024246Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040023-proteinTCONS_00040023-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040023-exon-sc0002271-1491911889:14222..14545TCONS_00040023-exon-sc0002271-1491911889:14222..14545Clytia hemisphaericaexon
TCONS_00040023-exon-sc0002271-1510915933:14222..14545TCONS_00040023-exon-sc0002271-1510915933:14222..14545Clytia hemisphaericaexon
TCONS_00040023-exon-sc0002271-1575043694:14222..14545TCONS_00040023-exon-sc0002271-1575043694:14222..14545Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002271supercontigsc0002271:14222..14545 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.760822	0.300817	1.7615	0.683426	0.416003	0	0.3966	0	0.25995	0	0	0.93742	0	0	0	0	0	0.338861	0	0	0.298256	0.436437	0	0.321562	0	0.295589	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000477RT_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040023 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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