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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00040022 ID=TCONS_00040022|Name=TCONS_00040022|organism=Clytia hemisphaerica|type=transcript|length=1711bp
CTACAGTAAAATCTGAGACGGAATGGACAGCCAAAATCCATCATCACGGC
AAATCACTTTTAAAGTTCAATATGGTGAAAACCGCGATACCGATTTAACA
TTTGTTGAGGATGAGGAGACGACGGTTCTCAGTATAAAATATCATTTAGT
TTTGAAACTTGACTTACCAATAGAAAACCAATGTATCTTAAGAAAGGTAA
ATCAAGATTGGATTTATTTGAGGGACAATGAAACCCTGGTTTTCACTAGC
GATATAGAGCATCCAACAGCCGAAACGGTTGCTGAGATACAAATCGATTT
GAAATGTCTCGCCATCAAAGAACATTTATCATTATTCCCTTTCGCTGATG
ACAGGAAGAAATCTTTCGTATTTCCAAAAATTCGAGTTCTTCCGAAAAGA
TACACCATAGAAAACAATGTTATTGAAATAGGTTGGGACGAGTTTCAACG
TCATCATGCGTTGTGTACACTTAAAGGATTTCAAGCAATGATTTGTGACA
AATTAAACACAGATCCGAATGAATCTTTACTACTTTATACAGAGAGCTTT
AAAGAAAGATCTTTTCTCAAGAATACTGAACATTGGTTAGAAACTCTAAA
TGAATATGGGGTTCGTGAGCAGGTTTTAGACGTGTACATTGGAGTATTCA
GTCAACCTTCAAATACAGTTCAACAACAGTCAAACAGTTCAAACATTCTA
CGCCTTCCATTCATTAAGATATGTAATACTCGAGATGAGGAGATTGCCAA
ATGGTATCCCGACAGCAAAAGCTGCGATACAGTGAATCTAATGACAttca
ttcaaaatgaattgGAAATTCCTTTACAAAACCAAGTCCTTTATCACGCC
GAAAAGAAGTTAACACGATCAACAAATCTGACATCATTACTCATTACCAA
CGCGTATTCTATTGACATACATGTAGCTTACAAAACTTTCCCAAAAGCAC
CCGGAAAAGAGCTTTCAGAACGTTCAAGATCtcactttgaagagcttaga
tTACAAGAAGTGCGATCAATGACTATTAAAGATTTAGATACAAATTGGAC
AATTGTTGAAAACGCATTGGTTGTCATGTTAAACCCGTCAGCAGGATATG
GAGAGATCGTACACGTTATCAGTGATAAACttggtgaaaatttcatctAC
GATTTGTCCAAATCTGGGAAAACCTTATACAGAGGACTTGTTATCGAAGA
ATTGTTTTACAACGGCGGTGTATTCAGCGAGGATATTGAACTCAAATGTT
CTTTGAATTACACGAAATCCAAGCCTGGCGAAGATCAAGACTGTGATAGG
AGAATGTATGGTTTCAAGAAATTGGTCATCAAATCTTTAACGAAAGTCAT
AGAGCTTGATGTGTCAACTTTTAACACTTTAGACAAATTGAGAAGATTTA
TTGAATCTGAATGGGAAATCTCTAAACGGTGTCAAGTTTACATGACAAAG
GATCGAAAGATTGGACCAGATTCGAACGAGTCTCTGCTAATGCTTTACAA
GCATACCACAACCGAAGAAGAACGAAAACAAAACGCCTTGTATTTCAACT
TGATAACACTTGAGCCTAAAAACGTCACGGTATATCTCAATTGCGCTTAC
GGAGGGAGAATTGGGATGCCAGAAACCATCGACATTTTAGAAACATCTAC
AGTCAAAGACCTAGAAAACAGGTTATCGGAAATGATGAATATTCAAATAT
CCGTATTCCCA Run BLAST on NCBI protein sequence of TCONS_00040022-protein >TCONS_00040022-protein ID=TCONS_00040022-protein|Name=TCONS_00040022-protein|organism=Clytia hemisphaerica|type=polypeptide|length=563bp
MDSQNPSSRQITFKVQYGENRDTDLTFVEDEETTVLSIKYHLVLKLDLPI
ENQCILRKVNQDWIYLRDNETLVFTSDIEHPTAETVAEIQIDLKCLAIKE
HLSLFPFADDRKKSFVFPKIRVLPKRYTIENNVIEIGWDEFQRHHALCTL
KGFQAMICDKLNTDPNESLLLYTESFKERSFLKNTEHWLETLNEYGVREQ
VLDVYIGVFSQPSNTVQQQSNSSNILRLPFIKICNTRDEEIAKWYPDSKS
CDTVNLMTFIQNELEIPLQNQVLYHAEKKLTRSTNLTSLLITNAYSIDIH
VAYKTFPKAPGKELSERSRSHFEELRLQEVRSMTIKDLDTNWTIVENALV
VMLNPSAGYGEIVHVISDKLGENFIYDLSKSGKTLYRGLVIEELFYNGGV
FSEDIELKCSLNYTKSKPGEDQDCDRRMYGFKKLVIKSLTKVIELDVSTF
NTLDKLRRFIESEWEISKRCQVYMTKDRKIGPDSNESLLMLYKHTTTEEE
RKQNALYFNLITLEPKNVTVYLNCAYGGRIGMPETIDILETSTVKDLENR
LSEMMNIQISVFP Run BLAST on NCBI transcript from alignment at sc0002269:15103..16813 Legend: exonCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00040022 ID=TCONS_00040022|Name=TCONS_00040022|organism=Clytia hemisphaerica|type=transcript|length=1711bp|location=Sequence derived from alignment at sc0002269:15103..16813 (Clytia hemisphaerica)
TGGGAATACGGATATTTGAATATTCATCATTTCCGATAACCTGTTTTCTA
GGTCTTTGACTGTAGATGTTTCTAAAATGTCGATGGTTTCTGGCATCCCA
ATTCTCCCTCCGTAAGCGCAATTGAGATATACCGTGACGTTTTTAGGCTC
AAGTGTTATCAAGTTGAAATACAAGGCGTTTTGTTTTCGTTCTTCTTCGG
TTGTGGTATGCTTGTAAAGCATTAGCAGAGACTCGTTCGAATCTGGTCCA
ATCTTTCGATCCTTTGTCATGTAAACTTGACACCGTTTAGAGATTTCCCA
TTCAGATTCAATAAATCTTCTCAATTTGTCTAAAGTGTTAAAAGTTGACA
CATCAAGCTCTATGACTTTCGTTAAAGATTTGATGACCAATTTCTTGAAA
CCATACATTCTCCTATCACAGTCTTGATCTTCGCCAGGCTTGGATTTCGT
GTAATTCAAAGAACATTTGAGTTCAATATCCTCGCTGAATACACCGCCGT
TGTAAAACAATTCTTCGATAACAAGTCCTCTGTATAAGGTTTTCCCAGAT
TTGGACAAATCGTagatgaaattttcaccaaGTTTATCACTGATAACGTG
TACGATCTCTCCATATCCTGCTGACGGGTTTAACATGACAACCAATGCGT
TTTCAACAATTGTCCAATTTGTATCTAAATCTTTAATAGTCATTGATCGC
ACTTCTTGTAatctaagctcttcaaagtgaGATCTTGAACGTTCTGAAAG
CTCTTTTCCGGGTGCTTTTGGGAAAGTTTTGTAAGCTACATGTATGTCAA
TAGAATACGCGTTGGTAATGAGTAATGATGTCAGATTTGTTGATCGTGTT
AACTTCTTTTCGGCGTGATAAAGGACTTGGTTTTGTAAAGGAATTTCcaa
ttcattttgaatgaaTGTCATTAGATTCACTGTATCGCAGCTTTTGCTGT
CGGGATACCATTTGGCAATCTCCTCATCTCGAGTATTACATATCTTAATG
AATGGAAGGCGTAGAATGTTTGAACTGTTTGACTGTTGTTGAACTGTATT
TGAAGGTTGACTGAATACTCCAATGTACACGTCTAAAACCTGCTCACGAA
CCCCATATTCATTTAGAGTTTCTAACCAATGTTCAGTATTCTTGAGAAAA
GATCTTTCTTTAAAGCTCTCTGTATAAAGTAGTAAAGATTCATTCGGATC
TGTGTTTAATTTGTCACAAATCATTGCTTGAAATCCTTTAAGTGTACACA
ACGCATGATGACGTTGAAACTCGTCCCAACCTATTTCAATAACATTGTTT
TCTATGGTGTATCTTTTCGGAAGAACTCGAATTTTTGGAAATACGAAAGA
TTTCTTCCTGTCATCAGCGAAAGGGAATAATGATAAATGTTCTTTGATGG
CGAGACATTTCAAATCGATTTGTATCTCAGCAACCGTTTCGGCTGTTGGA
TGCTCTATATCGCTAGTGAAAACCAGGGTTTCATTGTCCCTCAAATAAAT
CCAATCTTGATTTACCTTTCTTAAGATACATTGGTTTTCTATTGGTAAGT
CAAGTTTCAAAACTAAATGATATTTTATACTGAGAACCGTCGTCTCCTCA
TCCTCAACAAATGTTAAATCGGTATCGCGGTTTTCACCATATTGAACTTT
AAAAGTGATTTGCCGTGATGATGGATTTTGGCTGTCCATTCCGTCTCAGA
TTTTACTGTAG Coding sequence (CDS) from alignment at sc0002269:15103..16813 >TCONS_00040022 ID=TCONS_00040022|Name=TCONS_00040022|organism=Clytia hemisphaerica|type=CDS|length=1689bp|location=Sequence derived from alignment at sc0002269:15103..16813 (Clytia hemisphaerica)
TGGGAATACGGATATTTGAATATTCATCATTTCCGATAACCTGTTTTCTA
GGTCTTTGACTGTAGATGTTTCTAAAATGTCGATGGTTTCTGGCATCCCA
ATTCTCCCTCCGTAAGCGCAATTGAGATATACCGTGACGTTTTTAGGCTC
AAGTGTTATCAAGTTGAAATACAAGGCGTTTTGTTTTCGTTCTTCTTCGG
TTGTGGTATGCTTGTAAAGCATTAGCAGAGACTCGTTCGAATCTGGTCCA
ATCTTTCGATCCTTTGTCATGTAAACTTGACACCGTTTAGAGATTTCCCA
TTCAGATTCAATAAATCTTCTCAATTTGTCTAAAGTGTTAAAAGTTGACA
CATCAAGCTCTATGACTTTCGTTAAAGATTTGATGACCAATTTCTTGAAA
CCATACATTCTCCTATCACAGTCTTGATCTTCGCCAGGCTTGGATTTCGT
GTAATTCAAAGAACATTTGAGTTCAATATCCTCGCTGAATACACCGCCGT
TGTAAAACAATTCTTCGATAACAAGTCCTCTGTATAAGGTTTTCCCAGAT
TTGGACAAATCGTagatgaaattttcaccaaGTTTATCACTGATAACGTG
TACGATCTCTCCATATCCTGCTGACGGGTTTAACATGACAACCAATGCGT
TTTCAACAATTGTCCAATTTGTATCTAAATCTTTAATAGTCATTGATCGC
ACTTCTTGTAatctaagctcttcaaagtgaGATCTTGAACGTTCTGAAAG
CTCTTTTCCGGGTGCTTTTGGGAAAGTTTTGTAAGCTACATGTATGTCAA
TAGAATACGCGTTGGTAATGAGTAATGATGTCAGATTTGTTGATCGTGTT
AACTTCTTTTCGGCGTGATAAAGGACTTGGTTTTGTAAAGGAATTTCcaa
ttcattttgaatgaaTGTCATTAGATTCACTGTATCGCAGCTTTTGCTGT
CGGGATACCATTTGGCAATCTCCTCATCTCGAGTATTACATATCTTAATG
AATGGAAGGCGTAGAATGTTTGAACTGTTTGACTGTTGTTGAACTGTATT
TGAAGGTTGACTGAATACTCCAATGTACACGTCTAAAACCTGCTCACGAA
CCCCATATTCATTTAGAGTTTCTAACCAATGTTCAGTATTCTTGAGAAAA
GATCTTTCTTTAAAGCTCTCTGTATAAAGTAGTAAAGATTCATTCGGATC
TGTGTTTAATTTGTCACAAATCATTGCTTGAAATCCTTTAAGTGTACACA
ACGCATGATGACGTTGAAACTCGTCCCAACCTATTTCAATAACATTGTTT
TCTATGGTGTATCTTTTCGGAAGAACTCGAATTTTTGGAAATACGAAAGA
TTTCTTCCTGTCATCAGCGAAAGGGAATAATGATAAATGTTCTTTGATGG
CGAGACATTTCAAATCGATTTGTATCTCAGCAACCGTTTCGGCTGTTGGA
TGCTCTATATCGCTAGTGAAAACCAGGGTTTCATTGTCCCTCAAATAAAT
CCAATCTTGATTTACCTTTCTTAAGATACATTGGTTTTCTATTGGTAAGT
CAAGTTTCAAAACTAAATGATATTTTATACTGAGAACCGTCGTCTCCTCA
TCCTCAACAAATGTTAAATCGGTATCGCGGTTTTCACCATATTGAACTTT
AAAAGTGATTTGCCGTGATGATGGATTTTGGCTGTCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00040022-exon-sc0002269-1491911889:15103..16813 | TCONS_00040022-exon-sc0002269-1491911889:15103..16813 | Clytia hemisphaerica | exon |
| TCONS_00040022-exon-sc0002269-1510915933:15103..16813 | TCONS_00040022-exon-sc0002269-1510915933:15103..16813 | Clytia hemisphaerica | exon |
| TCONS_00040022-exon-sc0002269-1575043694:15103..16813 | TCONS_00040022-exon-sc0002269-1575043694:15103..16813 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| sc0002269 | supercontig | sc0002269:15103..16813 . |
Blast
The following BLAST results are available for this feature:
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