TCONS_00040011 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040011
Unique NameTCONS_00040011
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length263

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040011 ID=TCONS_00040011|Name=TCONS_00040011|organism=Clytia hemisphaerica|type=transcript|length=263bp
ACAATAAACGAAAAAACGATaataaagaacgacatattttgccatccaca
accctgaccgaaagtgactgtatgTAACAGATGATACTAACTTCAAGCAG
CATATCAATGGTATGGTCAAGAAATCAACAGAACTTGTCGGCTGggtttt
aaaaactttcaaatccaGAAGTAGAAAAGTGATGACAACACTGTGGAAGT
CGTTAATCATCCCCCATTTGGAATATTGTTCCCAGCTTTGGAACCCACAT
GATTAGggccagg
Run BLAST on NCBI

transcript from alignment at sc0002266:12014..12276

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040011 ID=TCONS_00040011|Name=TCONS_00040011|organism=Clytia hemisphaerica|type=transcript|length=263bp|location=Sequence derived from alignment at sc0002266:12014..12276 (Clytia hemisphaerica)
cctggccCTAATCATGTGGGTTCCAAAGCTGGGAACAATATTCCAAATGG
GGGATGATTAACGACTTCCACAGTGTTGTCATCACTTTTCTACTTCtgga
tttgaaagtttttaaaaccCAGCCGACAAGTTCTGTTGATTTCTTGACCA
TACCATTGATATGCTGCTTGAAGTTAGTATCATCTGTTAcatacagtcac
tttcggtcagggttgtggatggcaaaatatgtcgttctttattATCGTTT
TTTCGTTTATTGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024234XLOC_024234Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040011-exon-sc0002266-1491911889:12014..12276TCONS_00040011-exon-sc0002266-1491911889:12014..12276Clytia hemisphaericaexon
TCONS_00040011-exon-sc0002266-1510915933:12014..12276TCONS_00040011-exon-sc0002266-1510915933:12014..12276Clytia hemisphaericaexon
TCONS_00040011-exon-sc0002266-1575043694:12014..12276TCONS_00040011-exon-sc0002266-1575043694:12014..12276Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002266supercontigsc0002266:12014..12276 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.51017	1.2239	1.42107	0.695147	0.846275	0.668738	3.22722	2.26596	1.05763	0	1.90735	1.67176	1.25207	0.866861	1.42536	1.14722	3.76875	1.44857	0.667091	0	1.21349	0	3.59763	0.654154	1.34753	1.80395	2.58145	2.755	1.39304	1.41929
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040011 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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