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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00040005 ID=TCONS_00040005|Name=TCONS_00040005|organism=Clytia hemisphaerica|type=transcript|length=1033bp
ATACGCAAGCTGATATTGAAAAAATTCAGTCATTCGAACATACTGATACA
ACTGAATGGCCTGAGAACTTCATGAAAATGTACATCACAAACAACTTGAA
AGACCAACAAAATGAAAAGAGCTTAAAATCTTTACAGGATTGGGATAATA
AACGCACTTCAATAGCTAAGGATGAATCAAGACAAAAAGTAACTTTGAAT
AAATATGTTCCGATTAACAAAACTGCAGGACTTCCAAAAGAATTAATATT
ATGTGTTGGTGCTAGGGTTATGCTTACAATTAACAAAGATGTAGAGGATA
AATTGATCAACGGATCTACCGGAATAGTGAAACATATCCAAGGCTTAAGA
GATAACAAACCATGTGGCGTTATTTATGTTCAATTTGACAACCCTTTATC
aggaaataaattgaaaaatgcaAGATTGAAAGGAGAATTGAAAACGTGTG
TTCCCGTTCAACCAGAagtaaaaacattcaaaacatcgaaaaatatttat
gtGACAAGAAAGCAATTTCCATTAATAGTTGCTTTTGCTACAACAATACA
TAAAGCACAAGGTAGTACATTAGAATATGCTAGTGGAGATCTAGATCAAA
CGACTAGAAGCGGAAAAGGATTAGCACCAGTTGGACCAGGATTACTTTAT
ACACTTCTGTCTCGCGCAACATCGAGTGACAAGATTCATCTGCTAAATTT
TATTCCTGAAAGGCACATTGTTGTAAATTCAGATGCAAagaaagaaatgg
aagaaatgAGGACAAACAAAGTGTTATCAATAGTACATCCACTTGAGGAA
ATGAATAGTAAAAATTTGTGTCTGTACAATATAAGATCGTGGAATTTACA
TataaatcattttctttcaaatgactTGCATACATCCAGATGTTATTTAT
TATGTTTCACAGAGACGGGTAATAACGCTAGAGGAAATATTGAGGATAGT
GAAAAACTACGACATTGGAAAACGATTCATCAGAGAACTGCCCATGGCTT
AGCAATCAGTTACGATACAAATCAAGTAAATGT Run BLAST on NCBI protein sequence of TCONS_00040005-protein >TCONS_00040005-protein ID=TCONS_00040005-protein|Name=TCONS_00040005-protein|organism=Clytia hemisphaerica|type=polypeptide|length=343bp
TQADIEKIQSFEHTDTTEWPENFMKMYITNNLKDQQNEKSLKSLQDWDNK
RTSIAKDESRQKVTLNKYVPINKTAGLPKELILCVGARVMLTINKDVEDK
LINGSTGIVKHIQGLRDNKPCGVIYVQFDNPLSGNKLKNARLKGELKTCV
PVQPEVKTFKTSKNIYVTRKQFPLIVAFATTIHKAQGSTLEYASGDLDQT
TRSGKGLAPVGPGLLYTLLSRATSSDKIHLLNFIPERHIVVNSDAKKEME
EMRTNKVLSIVHPLEEMNSKNLCLYNIRSWNLHINHFLSNDLHTSRCYLL
CFTETGNNARGNIEDSEKLRHWKTIHQRTAHGLAISYDTNQVN Run BLAST on NCBI transcript from alignment at sc0002265:1173..2205 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00040005 ID=TCONS_00040005|Name=TCONS_00040005|organism=Clytia hemisphaerica|type=transcript|length=1033bp|location=Sequence derived from alignment at sc0002265:1173..2205 (Clytia hemisphaerica)
ACATTTACTTGATTTGTATCGTAACTGATTGCTAAGCCATGGGCAGTTCT
CTGATGAATCGTTTTCCAATGTCGTAGTTTTTCACTATCCTCAATATTTC
CTCTAGCGTTATTACCCGTCTCTGTGAAACATAATAAATAACATCTGGAT
GTATGCAagtcatttgaaagaaaatgatttatATGTAAATTCCACGATCT
TATATTGTACAGACACAAATTTTTACTATTCATTTCCTCAAGTGGATGTA
CTATTGATAACACTTTGTTTGTCCTcatttcttccatttctttctTTGCA
TCTGAATTTACAACAATGTGCCTTTCAGGAATAAAATTTAGCAGATGAAT
CTTGTCACTCGATGTTGCGCGAGACAGAAGTGTATAAAGTAATCCTGGTC
CAACTGGTGCTAATCCTTTTCCGCTTCTAGTCGTTTGATCTAGATCTCCA
CTAGCATATTCTAATGTACTACCTTGTGCTTTATGTATTGTTGTAGCAAA
AGCAACTATTAATGGAAATTGCTTTCTTGTCacataaatatttttcgatg
ttttgaatgtttttactTCTGGTTGAACGGGAACACACGTTTTCAATTCT
CCTTTCAATCTtgcatttttcaatttatttcctGATAAAGGGTTGTCAAA
TTGAACATAAATAACGCCACATGGTTTGTTATCTCTTAAGCCTTGGATAT
GTTTCACTATTCCGGTAGATCCGTTGATCAATTTATCCTCTACATCTTTG
TTAATTGTAAGCATAACCCTAGCACCAACACATAATATTAATTCTTTTGG
AAGTCCTGCAGTTTTGTTAATCGGAACATATTTATTCAAAGTTACTTTTT
GTCTTGATTCATCCTTAGCTATTGAAGTGCGTTTATTATCCCAATCCTGT
AAAGATTTTAAGCTCTTTTCATTTTGTTGGTCTTTCAAGTTGTTTGTGAT
GTACATTTTCATGAAGTTCTCAGGCCATTCAGTTGTATCAGTATGTTCGA
ATGACTGAATTTTTTCAATATCAGCTTGCGTAT Coding sequence (CDS) from alignment at sc0002265:1173..2205 >TCONS_00040005 ID=TCONS_00040005|Name=TCONS_00040005|organism=Clytia hemisphaerica|type=CDS|length=1029bp|location=Sequence derived from alignment at sc0002265:1173..2205 (Clytia hemisphaerica)
ATTTACTTGATTTGTATCGTAACTGATTGCTAAGCCATGGGCAGTTCTCT
GATGAATCGTTTTCCAATGTCGTAGTTTTTCACTATCCTCAATATTTCCT
CTAGCGTTATTACCCGTCTCTGTGAAACATAATAAATAACATCTGGATGT
ATGCAagtcatttgaaagaaaatgatttatATGTAAATTCCACGATCTTA
TATTGTACAGACACAAATTTTTACTATTCATTTCCTCAAGTGGATGTACT
ATTGATAACACTTTGTTTGTCCTcatttcttccatttctttctTTGCATC
TGAATTTACAACAATGTGCCTTTCAGGAATAAAATTTAGCAGATGAATCT
TGTCACTCGATGTTGCGCGAGACAGAAGTGTATAAAGTAATCCTGGTCCA
ACTGGTGCTAATCCTTTTCCGCTTCTAGTCGTTTGATCTAGATCTCCACT
AGCATATTCTAATGTACTACCTTGTGCTTTATGTATTGTTGTAGCAAAAG
CAACTATTAATGGAAATTGCTTTCTTGTCacataaatatttttcgatgtt
ttgaatgtttttactTCTGGTTGAACGGGAACACACGTTTTCAATTCTCC
TTTCAATCTtgcatttttcaatttatttcctGATAAAGGGTTGTCAAATT
GAACATAAATAACGCCACATGGTTTGTTATCTCTTAAGCCTTGGATATGT
TTCACTATTCCGGTAGATCCGTTGATCAATTTATCCTCTACATCTTTGTT
AATTGTAAGCATAACCCTAGCACCAACACATAATATTAATTCTTTTGGAA
GTCCTGCAGTTTTGTTAATCGGAACATATTTATTCAAAGTTACTTTTTGT
CTTGATTCATCCTTAGCTATTGAAGTGCGTTTATTATCCCAATCCTGTAA
AGATTTTAAGCTCTTTTCATTTTGTTGGTCTTTCAAGTTGTTTGTGATGT
ACATTTTCATGAAGTTCTCAGGCCATTCAGTTGTATCAGTATGTTCGAAT
GACTGAATTTTTTCAATATCAGCTTGCGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00040005-exon-sc0002265-1491911889:1173..2205 | TCONS_00040005-exon-sc0002265-1491911889:1173..2205 | Clytia hemisphaerica | exon |
| TCONS_00040005-exon-sc0002265-1510915933:1173..2205 | TCONS_00040005-exon-sc0002265-1510915933:1173..2205 | Clytia hemisphaerica | exon |
| TCONS_00040005-exon-sc0002265-1575043694:1173..2205 | TCONS_00040005-exon-sc0002265-1575043694:1173..2205 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002265 | supercontig | sc0002265:1173..2205 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR027417 | P-loop_NTPase |
Blast
The following BLAST results are available for this feature:
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