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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00040001 ID=TCONS_00040001|Name=TCONS_00040001|organism=Clytia hemisphaerica|type=transcript|length=1256bp
acgTAAACTTGGAAGTTGATTTGCCTAGTTTCTTTGGAACATATGACTCT
GATGATAGCATGCAATCAGATTTTCTGGACTATGCAATGTCGTTGCCAAT
TGATGACACAACTGAACTAATCAATGACAGGAAATTgtaagtaatttttt
tattgatctGTAATTTTCAACCTCAGATGGTTCGAAGTAGTGTTCCCACA
AAATCCCCAAAACATGTGTCCGGGGGAGGGGAGGGGCttggaaattttag
attttctggAAGGGCTAAGATAAAAGGGTTGAGGTAATTTTTTTGGAGGG
GACTAAGACCCCTAAGGACACTATGAGGAACTACAAGACCagttataaaa
aataaagacaTTAGAGAAATTTATGGTATTCATTAAATACTTTAAAATGG
AAAGTTATCACTATGCCTTTGATCATTTTTAGGAGCAGTATAAAGAATAT
ACCATCTGAGCACTTAATGTATGTCAAAGCCACTGAATACAATAGCAAAG
GAGTCCTTCTTATTGACCCCAAGAAATTGACTTGTGTTGAAAATGATACC
GTTGTTCCGATCTTGATGAATACCCCTTTTGTGTTCAATCACTTGGTGTC
AACATCCGTTCCaagaaatgttaaaaacaatgGTGCTTTCATCGTCGACC
TTGATAAACTCGAAGATCCTGCTGATGTCCTCTGTGATGACCTTGGTAGC
TGGAAGCAATCTAAAACCGCTACAAAGAAATACCAAGTCCACCGCACCAA
ATCAGGACATGTTTCCAGAATATCCTTGTATGATAATGATGCAGATGATC
CAAGCACTGACATGGTAATCGTTACTCGACGTTCCTATATTAATAAATCA
GATGGAACATTAAAGAGAGCATTTGTGTCACTTTCAATGAACAACCAAAT
TCATAATCTTGTTTTTCTGTCTTACAAATTCAATGGTCCTGAGCACGAAG
TAAAAGTTCAAAAGCATGGAAATTCAAAAGCCCCAATACCATTTTTGCGC
ACTTACACGAGCACTCGCAGGAAGATactaaaatcagtaaaatcaataCC
CAATCCATCACGTGCCCACTATGATGTTGTTAGTTCGATGGAGGAAGTTG
GTGCACTTGGTCAATTACCGCGTAATGTTCGCCAAGTTAAGTATGAGAAA
TCCAAAGAGAAAACTAAGACTGTTGATCCATTGTATCAAATCACCAATGC
TATGAGAAACGTTGAAAGCAACACAGATCGGTTCATCAGAACTTATCAAC
TCGACG Run BLAST on NCBI transcript from alignment at sc0002265:24467..26173+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00040001 ID=TCONS_00040001|Name=TCONS_00040001|organism=Clytia hemisphaerica|type=transcript|length=1707bp|location=Sequence derived from alignment at sc0002265:24467..26173+ (Clytia hemisphaerica)
acgTAAACTTGGAAGTTGATTTGCCTAGTTTCTTTGGAACATATGACTCT
GATGATAGGTAAATTCCCCtctaatttttaatattttttttcctttatta
GCTTGGGTATGACAAGGCTTTCTACGCCTGGATTCAGGGGGGTTGATTTT
TGAGCAAAGAACTGGGTACTTGGGTAAGAGTAATCTTGTTCCTTTTGTTG
AAAGCTCCTTAAAAAGTTCCACCCCTCATAGATTTAGAGGCTTTTTAGAA
TTCACAAAATTGCCTATTGGGTTTCAACTTTGGGGGTTGCTTGGATTATT
TCTATTCAAAAGCTCTTAGAATCATTATTTAAGTTTAgggttttaaattt
taatttattcatctcaaaaggaattttacaaaaataactaataaataaaa
aatacatcaCCAAATGTTAAATAGGTCAATGTTAGGAAAAGGTTTAAGCT
TTCTTATTGTGTTAGAGCTTGTAATCATAGTCTTGAAAGGTTATCAATTT
ATATTATAGCATGCAATCAGATTTTCTGGACTATGCAATGTCGTTGCCAA
TTGATGACACAACTGAACTAATCAATGACAGGAAATTgtaagtaattttt
ttattgatctGTAATTTTCAACCTCAGATGGTTCGAAGTAGTGTTCCCAC
AAAATCCCCAAAACATGTGTCCGGGGGAGGGGAGGGGCttggaaatttta
gattttctggAAGGGCTAAGATAAAAGGGTTGAGGTAATTTTTTTGGAGG
GGACTAAGACCCCTAAGGACACTATGAGGAACTACAAGACCagttataaa
aaataaagacaTTAGAGAAATTTATGGTATTCATTAAATACTTTAAAATG
GAAAGTTATCACTATGCCTTTGATCATTTTTAGGAGCAGTATAAAGAATA
TACCATCTGAGCACTTAATGTATGTCAAAGCCACTGAATACAATAGCAAA
GGAGTCCTTCTTATTGACCCCAAGAAATTGACTTGTGTTGAAAATGATAC
CGTTGTTCCGATCTTGATGAATACCCCTTTTGTGTTCAATCACTTGGTGT
CAACATCCGTTCCaagaaatgttaaaaacaatgGTGCTTTCATCGTCGAC
CTTGATAAACTCGAAGATCCTGCTGATGTCCTCTGTGATGACCTTGGTAG
CTGGAAGCAATCTAAAACCGCTACAAAGAAATACCAAGTCCACCGCACCA
AATCAGGACATGTTTCCAGAATATCCTTGTATGATAATGATGCAGATGAT
CCAAGCACTGACATGGTAATCGTTACTCGACGTTCCTATATTAATAAATC
AGATGGAACATTAAAGAGAGCATTTGTGTCACTTTCAATGAACAACCAAA
TTCATAATCTTGTTTTTCTGTCTTACAAATTCAATGGTCCTGAGCACGAA
GTAAAAGTTCAAAAGCATGGAAATTCAAAAGCCCCAATACCATTTTTGCG
CACTTACACGAGCACTCGCAGGAAGATactaaaatcagtaaaatcaataC
CCAATCCATCACGTGCCCACTATGATGTTGTTAGTTCGATGGAGGAAGTT
GGTGCACTTGGTCAATTACCGCGTAATGTTCGCCAAGTTAAGTATGAGAA
ATCCAAAGAGAAAACTAAGACTGTTGATCCATTGTATCAAATCACCAATG
CTATGAGAAACGTTGAAAGCAACACAGATCGGTTCATCAGAACTTATCAA
CTCGACG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00040001-exon-sc0002265-1491911889:24467..24524 | TCONS_00040001-exon-sc0002265-1491911889:24467..24524 | Clytia hemisphaerica | exon |
| TCONS_00040001-exon-sc0002265-1510915933:24467..24524 | TCONS_00040001-exon-sc0002265-1510915933:24467..24524 | Clytia hemisphaerica | exon |
| TCONS_00040001-exon-sc0002265-1575043694:24467..24524 | TCONS_00040001-exon-sc0002265-1575043694:24467..24524 | Clytia hemisphaerica | exon |
| TCONS_00040001-exon-sc0002265-1491911889:24976..26173 | TCONS_00040001-exon-sc0002265-1491911889:24976..26173 | Clytia hemisphaerica | exon |
| TCONS_00040001-exon-sc0002265-1510915933:24976..26173 | TCONS_00040001-exon-sc0002265-1510915933:24976..26173 | Clytia hemisphaerica | exon |
| TCONS_00040001-exon-sc0002265-1575043694:24976..26173 | TCONS_00040001-exon-sc0002265-1575043694:24976..26173 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002265 | supercontig | sc0002265:24467..26173 + |
Blast
The following BLAST results are available for this feature:
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