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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00039996 ID=TCONS_00039996|Name=TCONS_00039996|organism=Clytia hemisphaerica|type=transcript|length=1331bp
AACAACAGCCATATTTTTAAATGCTGCAGCATAGGGGGATACTTCATTCA
TCATATTCTGGAGTTGTTGTACTAATGGCCTATTTAAAGCTTCACTACCC
TCATTAGCCATGCGATTGTTTAAAGCAGTGGCCCCCTCAATGATATATAA
CTGACTATAGCGGGGAAGAGAACCATCGGGTGGGAATAAGGTGCCATAGC
GATGATGGATTTGATCGGCAATTTTAAAGCAGGGGGGACCCCTATTGGGA
GGGGGTCGAATGTCAGCTGCCATCGAAGCAAAAGAAAAGCAGTTATTGTA
CGACcttattttctttcgaaaatgtTTTGCCTCCCTCGAATCTTCAGTGA
AAAGATTCTGTAATGCTAAAGGGATTTCAAGTAAAGGGGGCAAAGAAACT
TTACCATTGTGACAACAATTGAAATGTTTCTCATTGGGAAATTTAAGTGC
CTGACAAAACATACATAAATTATCAAAGGTACCTATTAAATGAGTGTCAG
GAAGAGTTGATAATTGAGGCCTTAAGTTCAAAACAAAGGGTTCATCCGCC
GGTTCAACCTCTAACTCATCATTGAGTTCAAGAAGTGTATTATATCTATC
CTCACTATAGGGTACAACCGCAGGTTGCGCATAAGCCTGTTCAGATACTA
ACCTGTTTCTATGTACAATATACAAAAGACGTAGGTTTTCAACTTCATCG
GGGTTAAGGTCTATGGTGTTACGTAAACTTCTCAAAAAATAGTTATCACT
ACGGTAAAGATTTCCCTCAACTCGAGGAAGAAGAGACTGAAAATGATGCT
CATTTATTTGCCCAATGTAGATAGTTATGTTGCGCGTCCCAGGTTCAtcg
ttcaaaacaaaaaatggatgGGCTATATCACAGTTATTAGAGGTTATCAA
AACTTTTATGTCTAAAAGCATGGCAGTGAAAAGGCAAAATATTCCTGACG
CATACATTCCGTTGCGAGGCTGCTCATTACAGTAATCCTCCCACTTTTCC
GGTTCATCGATGAAGGCAGTATCGCGGTAATAAGAGACCATATCCCTATG
GAGGTTTGAATTGAAAATTCTCGATACACATTCACGTAACTGAAGATGAT
CCATGTCACGAAATCTTCTTGGCACTAAAGGCTCAATATCAGGACGACGT
ATTTGATCTAGGACAGCATGGTACCAACAATTTCCATCAAAAGGTGTTAT
GCTGCTCAAGGAGAAGTCAAGACCAATAGCCCTGGCATTACATAAAATAA
TTTCTGCATCATCATCCAGTTCAGACATGCCCAGAGAAGGCAGCCCACCC
AAAAAAGGGGTACACAAACTTCTCAAAAAAG Run BLAST on NCBI protein sequence of TCONS_00039996-protein >TCONS_00039996-protein ID=TCONS_00039996-protein|Name=TCONS_00039996-protein|organism=Clytia hemisphaerica|type=polypeptide|length=443bp
FLRSLCTPFLGGLPSLGMSELDDDAEIILCNARAIGLDFSLSSITPFDGN
CWYHAVLDQIRRPDIEPLVPRRFRDMDHLQLRECVSRIFNSNLHRDMVSY
YRDTAFIDEPEKWEDYCNEQPRNGMYASGIFCLFTAMLLDIKVLITSNNC
DIAHPFFVLNDEPGTRNITIYIGQINEHHFQSLLPRVEGNLYRSDNYFLR
SLRNTIDLNPDEVENLRLLYIVHRNRLVSEQAYAQPAVVPYSEDRYNTLL
ELNDELEVEPADEPFVLNLRPQLSTLPDTHLIGTFDNLCMFCQALKFPNE
KHFNCCHNGKVSLPPLLEIPLALQNLFTEDSREAKHFRKKIRSYNNCFSF
ASMAADIRPPPNRGPPCFKIADQIHHRYGTLFPPDGSLPRYSQLYIIEGA
TALNNRMANEGSEALNRPLVQQLQNMMNEVSPYAAAFKNMAVV Run BLAST on NCBI transcript from alignment at sc0002262:16903..18233 Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00039996 ID=TCONS_00039996|Name=TCONS_00039996|organism=Clytia hemisphaerica|type=transcript|length=1331bp|location=Sequence derived from alignment at sc0002262:16903..18233 (Clytia hemisphaerica)
CTTTTTTGAGAAGTTTGTGTACCCCTTTTTTGGGTGGGCTGCCTTCTCTG
GGCATGTCTGAACTGGATGATGATGCAGAAATTATTTTATGTAATGCCAG
GGCTATTGGTCTTGACTTCTCCTTGAGCAGCATAACACCTTTTGATGGAA
ATTGTTGGTACCATGCTGTCCTAGATCAAATACGTCGTCCTGATATTGAG
CCTTTAGTGCCAAGAAGATTTCGTGACATGGATCATCTTCAGTTACGTGA
ATGTGTATCGAGAATTTTCAATTCAAACCTCCATAGGGATATGGTCTCTT
ATTACCGCGATACTGCCTTCATCGATGAACCGGAAAAGTGGGAGGATTAC
TGTAATGAGCAGCCTCGCAACGGAATGTATGCGTCAGGAATATTTTGCCT
TTTCACTGCCATGCTTTTAGACATAAAAGTTTTGATAACCTCTAATAACT
GTGATATAGCCcatccattttttgttttgaacgaTGAACCTGGGACGCGC
AACATAACTATCTACATTGGGCAAATAAATGAGCATCATTTTCAGTCTCT
TCTTCCTCGAGTTGAGGGAAATCTTTACCGTAGTGATAACTATTTTTTGA
GAAGTTTACGTAACACCATAGACCTTAACCCCGATGAAGTTGAAAACCTA
CGTCTTTTGTATATTGTACATAGAAACAGGTTAGTATCTGAACAGGCTTA
TGCGCAACCTGCGGTTGTACCCTATAGTGAGGATAGATATAATACACTTC
TTGAACTCAATGATGAGTTAGAGGTTGAACCGGCGGATGAACCCTTTGTT
TTGAACTTAAGGCCTCAATTATCAACTCTTCCTGACACTCATTTAATAGG
TACCTTTGATAATTTATGTATGTTTTGTCAGGCACTTAAATTTCCCAATG
AGAAACATTTCAATTGTTGTCACAATGGTAAAGTTTCTTTGCCCCCTTTA
CTTGAAATCCCTTTAGCATTACAGAATCTTTTCACTGAAGATTCGAGGGA
GGCAAAacattttcgaaagaaaataagGTCGTACAATAACTGCTTTTCTT
TTGCTTCGATGGCAGCTGACATTCGACCCCCTCCCAATAGGGGTCCCCCC
TGCTTTAAAATTGCCGATCAAATCCATCATCGCTATGGCACCTTATTCCC
ACCCGATGGTTCTCTTCCCCGCTATAGTCAGTTATATATCATTGAGGGGG
CCACTGCTTTAAACAATCGCATGGCTAATGAGGGTAGTGAAGCTTTAAAT
AGGCCATTAGTACAACAACTCCAGAATATGATGAATGAAGTATCCCCCTA
TGCTGCAGCATTTAAAAATATGGCTGTTGTT Coding sequence (CDS) from alignment at sc0002262:16903..18233 >TCONS_00039996 ID=TCONS_00039996|Name=TCONS_00039996|organism=Clytia hemisphaerica|type=CDS|length=1329bp|location=Sequence derived from alignment at sc0002262:16903..18233 (Clytia hemisphaerica)
TTTTTGAGAAGTTTGTGTACCCCTTTTTTGGGTGGGCTGCCTTCTCTGGG
CATGTCTGAACTGGATGATGATGCAGAAATTATTTTATGTAATGCCAGGG
CTATTGGTCTTGACTTCTCCTTGAGCAGCATAACACCTTTTGATGGAAAT
TGTTGGTACCATGCTGTCCTAGATCAAATACGTCGTCCTGATATTGAGCC
TTTAGTGCCAAGAAGATTTCGTGACATGGATCATCTTCAGTTACGTGAAT
GTGTATCGAGAATTTTCAATTCAAACCTCCATAGGGATATGGTCTCTTAT
TACCGCGATACTGCCTTCATCGATGAACCGGAAAAGTGGGAGGATTACTG
TAATGAGCAGCCTCGCAACGGAATGTATGCGTCAGGAATATTTTGCCTTT
TCACTGCCATGCTTTTAGACATAAAAGTTTTGATAACCTCTAATAACTGT
GATATAGCCcatccattttttgttttgaacgaTGAACCTGGGACGCGCAA
CATAACTATCTACATTGGGCAAATAAATGAGCATCATTTTCAGTCTCTTC
TTCCTCGAGTTGAGGGAAATCTTTACCGTAGTGATAACTATTTTTTGAGA
AGTTTACGTAACACCATAGACCTTAACCCCGATGAAGTTGAAAACCTACG
TCTTTTGTATATTGTACATAGAAACAGGTTAGTATCTGAACAGGCTTATG
CGCAACCTGCGGTTGTACCCTATAGTGAGGATAGATATAATACACTTCTT
GAACTCAATGATGAGTTAGAGGTTGAACCGGCGGATGAACCCTTTGTTTT
GAACTTAAGGCCTCAATTATCAACTCTTCCTGACACTCATTTAATAGGTA
CCTTTGATAATTTATGTATGTTTTGTCAGGCACTTAAATTTCCCAATGAG
AAACATTTCAATTGTTGTCACAATGGTAAAGTTTCTTTGCCCCCTTTACT
TGAAATCCCTTTAGCATTACAGAATCTTTTCACTGAAGATTCGAGGGAGG
CAAAacattttcgaaagaaaataagGTCGTACAATAACTGCTTTTCTTTT
GCTTCGATGGCAGCTGACATTCGACCCCCTCCCAATAGGGGTCCCCCCTG
CTTTAAAATTGCCGATCAAATCCATCATCGCTATGGCACCTTATTCCCAC
CCGATGGTTCTCTTCCCCGCTATAGTCAGTTATATATCATTGAGGGGGCC
ACTGCTTTAAACAATCGCATGGCTAATGAGGGTAGTGAAGCTTTAAATAG
GCCATTAGTACAACAACTCCAGAATATGATGAATGAAGTATCCCCCTATG
CTGCAGCATTTAAAAATATGGCTGTTGTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00039996-exon-sc0002262-1491911889:16903..18233 | TCONS_00039996-exon-sc0002262-1491911889:16903..18233 | Clytia hemisphaerica | exon |
| TCONS_00039996-exon-sc0002262-1510915933:16903..18233 | TCONS_00039996-exon-sc0002262-1510915933:16903..18233 | Clytia hemisphaerica | exon |
| TCONS_00039996-exon-sc0002262-1575043694:16903..18233 | TCONS_00039996-exon-sc0002262-1575043694:16903..18233 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002262 | supercontig | sc0002262:16903..18233 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR003323 | OTU_dom |
Blast
The following BLAST results are available for this feature:
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