TCONS_00039993 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039993
Unique NameTCONS_00039993
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length443

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039993 ID=TCONS_00039993|Name=TCONS_00039993|organism=Clytia hemisphaerica|type=transcript|length=443bp
aatattttaacTATTTTATAAAAGCACATTTTACGTATCAAATATTTATA
ATTAGTATATATTTTAATAATCAGTAAATATACCTTGTATAGAATCTTTA
AATTCCCACATTCcccgattttcagaaaaagggttTCTTTGATattctga
ttttttgaaaagatttcctgatttctgatttccgaaaatcggaaatGCCG
GGCTAAGTCTTTAAGATTTccttctttgaaatttttatctcgCGCAACAT
TCCAAGTTGGCAGATCTGTTTATTAGGGAGTCAAAATGGTATCACGCCTA
GCAAAAGGTCTACATACATGGTCTCTACATGGGGCAcatacaattaacaa
aacaacaaaaatcccaaaataaagaaaaaacaaagagAACAAATTGGGAA
ACAAATATCTTGAttccattttttaaactttgagtAAGGTGGC
Run BLAST on NCBI

transcript from alignment at sc0002261:19366..19808

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039993 ID=TCONS_00039993|Name=TCONS_00039993|organism=Clytia hemisphaerica|type=transcript|length=443bp|location=Sequence derived from alignment at sc0002261:19366..19808 (Clytia hemisphaerica)
GCCACCTTactcaaagtttaaaaaatggaaTCAAGATATTTGTTTCCCAA
TTTGTTctctttgttttttctttattttgggatttttgttgttttgttaa
ttgtatgTGCCCCATGTAGAGACCATGTATGTAGACCTTTTGCTAGGCGT
GATACCATTTTGACTCCCTAATAAACAGATCTGCCAACTTGGAATGTTGC
GcgagataaaaatttcaaagaaggAAATCTTAAAGACTTAGCCCGGCatt
tccgattttcggaaatcagaaatcaggaaatcttttcaaaaaatcagaat
ATCAAAGAaaccctttttctgaaaatcgggGAATGTGGGAATTTAAAGAT
TCTATACAAGGTATATTTACTGATTATTAAAATATATACTAATTATAAAT
ATTTGATACGTAAAATGTGCTTTTATAAAATAgttaaaatatt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024218XLOC_024218Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039993-exon-sc0002261-1491911889:19366..19808TCONS_00039993-exon-sc0002261-1491911889:19366..19808Clytia hemisphaericaexon
TCONS_00039993-exon-sc0002261-1510915933:19366..19808TCONS_00039993-exon-sc0002261-1510915933:19366..19808Clytia hemisphaericaexon
TCONS_00039993-exon-sc0002261-1575043694:19366..19808TCONS_00039993-exon-sc0002261-1575043694:19366..19808Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002261supercontigsc0002261:19366..19808 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.147848	0	0	0	0.161567	0.389848	0.182486	0	0	0	0	0.302502	0	0	0.184779	1.02435	0.116658	0	0	0.293179	0.429007	0	0	0	0	0.207893	0.221869	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039993 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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