TCONS_00039992 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039992
Unique NameTCONS_00039992
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length345

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039992 ID=TCONS_00039992|Name=TCONS_00039992|organism=Clytia hemisphaerica|type=transcript|length=345bp
ATATTCTTTTAACGCACCCTGACAGCTGACAAACAGGCTAGGTTAGACTT
ACCTCTTTTCTCTATCCTATTCCAACAATAATACAATGCTTACATAGTTG
GCACATAATACACATTGACAGAAGTATTCCCCATGCAatgtttatatcaa
aatctgcaatAAAAAAGTGAGTGATCTCTTCCTCAGTGACTTCCACAAGT
CGCTCCATCGGAAagtctttttttagatttataCCAATGAGATTGCCGTG
TATCATGAAAGTTAACAACAAGCCCAAATTTTTGGCCCTAATGGCTTTTT
GGCGCCTTGGAAGACGAGCAGTCATGtaactttatttgtttcaac
Run BLAST on NCBI

transcript from alignment at sc0002261:18812..19156

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039992 ID=TCONS_00039992|Name=TCONS_00039992|organism=Clytia hemisphaerica|type=transcript|length=345bp|location=Sequence derived from alignment at sc0002261:18812..19156 (Clytia hemisphaerica)
gttgaaacaaataaagttaCATGACTGCTCGTCTTCCAAGGCGCCAAAAA
GCCATTAGGGCCAAAAATTTGGGCTTGTTGTTAACTTTCATGATACACGG
CAATCTCATTGGtataaatctaaaaaaagactTTCCGATGGAGCGACTTG
TGGAAGTCACTGAGGAAGAGATCACTCACTTTTTTattgcagattttgat
ataaacatTGCATGGGGAATACTTCTGTCAATGTGTATTATGTGCCAACT
ATGTAAGCATTGTATTATTGTTGGAATAGGATAGAGAAAAGAGGTAAGTC
TAACCTAGCCTGTTTGTCAGCTGTCAGGGTGCGTTAAAAGAATAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024217XLOC_024217Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039992-exon-sc0002261-1491911889:18812..19156TCONS_00039992-exon-sc0002261-1491911889:18812..19156Clytia hemisphaericaexon
TCONS_00039992-exon-sc0002261-1510915933:18812..19156TCONS_00039992-exon-sc0002261-1510915933:18812..19156Clytia hemisphaericaexon
TCONS_00039992-exon-sc0002261-1575043694:18812..19156TCONS_00039992-exon-sc0002261-1575043694:18812..19156Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002261supercontigsc0002261:18812..19156 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.363354	0	0.288968	0.376473	0.27799	0.335383	0	0	0	0	0	0.173493	0	0	0.317927	0	0.20072	0	0.29018	0	0	0	0	0.560158	0	0.715395	0	0	0.58999
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039992 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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