TCONS_00039987 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039987
Unique NameTCONS_00039987
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length306

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039987 ID=TCONS_00039987|Name=TCONS_00039987|organism=Clytia hemisphaerica|type=transcript|length=306bp
TTTAGATTAAAAAAACGTAAGATAAAtaaacttaaacaaaaaataaaatt
atacaaaaaggAAGATCTTGCCATCTGTTGAAGTTATCCAAAAGAAGTAA
ACAAACGTGACAATAACTCCGATATTCAGGTATTTTTAAGTAACTACTTG
TTTATTATGAGATTCGGCGTGGAAGCGTTAAACAGGAGGTAAACCAAAAA
TAAGCTTTCTCAAATGAAATTTCTATAATAAGTTTTATATTTTAGGGTCC
CCAAATAAAGCCAGTATTCTAAAAATCCTTATAActaattctcaacttca
gttgag
Run BLAST on NCBI

transcript from alignment at sc0002260:544..849

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039987 ID=TCONS_00039987|Name=TCONS_00039987|organism=Clytia hemisphaerica|type=transcript|length=306bp|location=Sequence derived from alignment at sc0002260:544..849 (Clytia hemisphaerica)
ctcaactgaagttgagaattagTTATAAGGATTTTTAGAATACTGGCTTT
ATTTGGGGACCCTAAAATATAAAACTTATTATAGAAATTTCATTTGAGAA
AGCTTATTTTTGGTTTACCTCCTGTTTAACGCTTCCACGCCGAATCTCAT
AATAAACAAGTAGTTACTTAAAAATACCTGAATATCGGAGTTATTGTCAC
GTTTGTTTACTTCTTTTGGATAACTTCAACAGATGGCAAGATCTTccttt
ttgtataattttattttttgtttaagtttaTTTATCTTACGTTTTTTTAA
TCTAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024213XLOC_024213Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039987-exon-sc0002260-1491911889:544..849TCONS_00039987-exon-sc0002260-1491911889:544..849Clytia hemisphaericaexon
TCONS_00039987-exon-sc0002260-1510915933:544..849TCONS_00039987-exon-sc0002260-1510915933:544..849Clytia hemisphaericaexon
TCONS_00039987-exon-sc0002260-1575043694:544..849TCONS_00039987-exon-sc0002260-1575043694:544..849Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002260supercontigsc0002260:544..849 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.730989	0.712829	0	0	0.985779	0.778976	0.469901	0.439915	1.53998	0.381502	0.74059	0.730252	0.729237	0	1.66032	2.0045	1.92063	2.24981	0	0.406567	1.7669	3.1026	0.838137	1.14298	0	0	0	0	0.40567	0.413314
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039987 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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