TCONS_00039984 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039984
Unique NameTCONS_00039984
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1009

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039984 ID=TCONS_00039984|Name=TCONS_00039984|organism=Clytia hemisphaerica|type=transcript|length=1009bp
gGCAAAGATGGCAGACAAGCAAATGGaagaagatgaaatttttctcagcT
TTATTGCAACCAAACAGAACTTCAATAGTCTGGATGATAATTTTAATCCA
AATAGCTCGATAGATGATGTTATTCAATCAGAAATCCATTGTGTAGAAAA
TGGAGAATATGCTGTTGAGAAGATGATTATTGATGATGACGAACATGCCA
CTCAAGGTCAAGAACAAGAAGACCAAAACTTTAGTTTCTCTACAACTACT
ATAAATGACACTCAAGGGGCTGCTGAGGAGGAACATAATGATGCATTTGC
AAGTGTCCGTGACCAACTACAACCACAAAATAATGACTCTTCACAAGAGG
ACAGTCCTTTAACGTCAAATTGGGGCGATTTTTTTGATGTCAAGCTTGAA
GACTTACCACACATGAGACCAGAAACAAGATTCAAAGAAAATCTCATTGA
TCCTCGGACACgtgattctaactcaactgtgATAAAGGATGTTTATGATG
GAAAATTTTATAAAGATCTTATAAAAGatggatattttgaaaatgatggc
aTTAACTTAACTTGTCAATTGAATACTGATGGAGTTAGTTTGTTCAGAAG
TAGTACATTTTCAGTTTGGCCCGTTTATCTGCGAATCAATGAGCTACCAC
CCCTGTTGAGAAAATCCAAAGAATTCAAAATACTGCCTGGTTTATGGTTT
GGCAAAAAGAAGCCGTATATGAGGACCTTTCTGCGACCAATTGTAGATGC
AATGAAAAACTTGTGCAGAGGTTTTTGGGATCCGTGGATTTTCTATCCTT
GGGGAACTACCACATCTGAATATCATATGGAATTTCCCCTTTGACTATAT
GCATGGTGTATTCTTGGGGGTAGCAAAGTAAGATAAttgctatttttcaa
aattgaaaatccaAGTGAAACTAAATCTGAATATAAATGTTGCATTAGCC
TGGAATTATAACCAGGTAGAATTAGTACTAATAATCATATATGAAGGAGG
GCAATTCTG
Run BLAST on NCBI

transcript from alignment at sc0002260:6581..12590-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039984 ID=TCONS_00039984|Name=TCONS_00039984|organism=Clytia hemisphaerica|type=transcript|length=6010bp|location=Sequence derived from alignment at sc0002260:6581..12590- (Clytia hemisphaerica)
GGCAAAGATGGCAGACAAGCAAATGGAAGAAGATGAAATTTTTCTCAGCT
TTATTGCAACCAAACAGAACTTCAATAGTCTGGATGATAATTTTAATCCA
AATAGCTCGATAGATGATGTTATTCAATCAGAAATCCATTGTGTAGAAAA
TGGAGAATATGCTGTTGAGAAGATGATTATTGATGATGACGAACATGCCA
CTCAAGGTCAAGAACAAGAAGACCAAAACTTTAGTTTCTCTACAACTACT
ATAAATGACACTCAAGGGGCTGCTGAGGAGGAACATAATGATGCATTTGC
AAGTGTCCGTGACCAACTACAACCACAAAATAATGTAGGTTTAATACAAT
TAGATTATAAAGGGATAGAACTCCTAGACTATATGTATCACAAGTGTTTT
TTTTCAACCGGTATATATTTCCAACTGTCCAACGAAGCCATATTTTGGTT
TGTACAGAAATTTTGCCCGCTCAAATCTAAATAACAAAATGGTCAATCTC
ACTAAAGCAAAACATTGCGGCCACGGCATTTCCGCCAATAAGACGATATT
GGTGAAATTGGATGATTTACGACCCTGCCGGCGCACCGTACGTACAGTCC
GGTGTTTTTTGTCCGGTGTCAAAAAGTATCCTTTCGCTACACCGGATGTG
CGGTAAGACTGGTGTCAGTCCGGTGTTAAATGCAGGGAGCTCTAGGCACC
GAACATGCGTTTGAAAAAAATTAATGTGTAATTACACAGCCTTTCTAATT
CAGATTTATTTGCGTTGGCAAAAATTCTGGGTCCTATAGTACAGTAAGCA
CTTTTACGTCAGCATAGCCAAATTAGAATGGCTGTTACACCTTTGCACCT
TTGCACCTTATTCTAAATTCATGTATAATATTTTCCAATTCATTGAATTT
TTATCTCTTTTTATAGGACTCTTCACAAGAGGACAGTCCTTTAACGTCAA
ATTGGGGCGATTTTTTTGATGTCAAGCTTGAAGACTTACCACACATGAGA
CCAGGTAAATTCATTTTTGACTTTGAAATTTTTGATAACCTGCGATCATG
GTATACGTATACATTTGGTACTGCAATCCCGATACACGTGAACACGACCG
CAGTATACCAGATTCTGTTATAAAAACTCNGCGCTTTTTAATGAAATTAA
CATTTTCAAAAACTATGAGAAATTGCCTAAAATTTGAGCCATAGATGAAA
AAATTTGAGCCAAGCCAACCTTCAAAACTAATTCGAAGATCAACTTCCCA
AGAAAAAGATCNTCATGGTATACGTATACATTTGGTACTGCAATCCCGAT
ACACGTGAACACGACCGCAGTATACCAGATTCTGTTATAAAAACTCAGCA
CCTGGGGGTACTAGGGCAAAATGGGTTACAGGGATGCGCCGCTGGTCAGG
GTACCTTTTTTAACCTCTATAAGTCCCAGGTAGGTTCGCAAAAACACCAA
AGTAGAAAAATCAGTCCCTCGTAGGGTGCTTTTTTTGGAAAATGTGGGGA
AAAAGTAGAAAATTTGGGAATTTTAGTCCCACTTTTTTCGCAAAAACAAG
TCCCACGTAGGGTCCATTTTTCCAATCTCAGCAGAACACCCCCGTCAGTC
AGCAAGGGTAGTACCCCCCCGGAACTCAGCAATTGAAGTACNTGGTTGAT
TTTGGCTGCTGCACGTTTTATTTTGTTTCAAACTTTCAAGTTTTAATTAA
TTGTCTTGCGAACTTGATTCAGGTAACTCTCATCCTTATTGTGCAAATAC
ATCCTGTAGATGACTGATGTTGTTTTTTCTGAAAGCTAGATTTCCTAGTG
TGACTAACTGGTAGTACCCCCCGGAACTCAGCAATTGAAGTACACCGCGA
TCGCAGGTTATCCCTGACTGTTTATTGCAATTTCATAATAATTTGTAATA
ATATCTTTCAAAGATATGGCTGATGAAATAGTCCACATTCACAAATCAAA
TCCACCCAAAATTATGTTTTCAAGGCTTTTATTCCTATGTTTACTTGCTA
AAATATCCAAAGCAAACTGACCTTTTTGTTTATTTAAAAGGTGCTATGGA
CAATGATGATGATACTAGTGACACAGAACTTGATGATTTTGATCCCTTCA
AAGAGTATAGGTTGTTTAATGAGCCCAAGCCATTAGCAAGAGGGTTAAAC
ATATCTCTTGAAAATTCACTTATACTACATCTTTCATTTGCCAAGAGACA
CAACCTAACCAAAGCAGCACTACAAGATTTGCTCCATTTGACAAATCTCC
ATCTTGTTCAGCCAAATGATTTTCCCTTAACACTTGATAAATTATATTCT
GGTATTGGCTTGAGTACAATTGGAGTCTCAAAGAAATATTACTGCAAAAA
TTGTTTTGAACTTCTCTGTGAGAATGATGATCAGTGTCCTTCATGTAATT
TTGTTGGAAAGGACTTCTTTATCTACAACAGTATTGAAGAGCAGCTGAAA
CGGCAATTACAAAGTAATGTCAGTTTTTTATGCTACACATTTTATAGATT
CTCAAAAAAGACAACGCTGTTAGTTATTGAAATTGCAAATTTCAAAGTAA
AATCAAGAGAAAATTGTTTTAAAGAATTTTTAATTATAAGTACTGTCTTT
TTACTCTTGATGAATGTTCTTTTTTTATTTTTGCGATAGTTTATGATAAA
TATATGGTTTATGAAACCCTCTCTCAGATGGAAGTGATTGGAAATATCAA
TTCAACTGTTTCTGTTTCTATACTTTTATTTTAGAAACAAGATTCAAAGA
AAATCTCATTGATCCTCGGACACGTGATTCTAACTCAACTGTGATAAAGG
ATGTTTATGATGGAAAATTTTATAAAGATCTTATAAAAGATGGATATTTT
GAAAATGATGGCATTAACTTAACTTGTCAATTGAATACTGATGGAGTTAG
TTTGTTCAGAAGTAGTACATTTTCAGTTTGGCCCGTTTATCTGCGAATCA
ATGAGCTACCACCCCTGTTGAGGTATACTTTAAAGTTCTTGGAAATATTA
TAATACATAATTATGCTGAACTTCATGGTGAAGATCAAATTCATAGTTAA
AGACCAGGACCAGGCTTGGCAATATCATTAAAAAATTATGTTTTACATCA
CTTTGAAAAATGTCTACCTCTACCTACCTTTTCAGAAAATCCAAAGAATT
CAAAATACTGCCTGGTTTATGGTTTGGCAAAAAGAAGCCGTATATGAGGA
CCTTTCTGCGACCAATTGTAGATGCAATGAAAAACTTGTGCAGAGGTAAA
TTAGAGCTCTTGTTCTTTTTCAATAGATGTTTAACTAACAGTGGAATATT
ATCATATCAATTTTTTTTGACAAAACTTCAACACAAAAGATGAATTCTCA
AATCAATTTCTTGTGGAATTGTGTTATTAATACCATTTTCACACTTAGTA
TTAGTGAATCTCTATTCTTAGAACTTTTATCAATGTGAGAGAAATTTTAT
CAAATCATAAAGTTACAGATATTTTTGTTTTCACTAGCAATTGTATTTAG
ATAGTCATTAGATTATAATGATTTCTTTAGGCTTAGACCTTGAATTAGAT
GATGGATCAAACAAGACCGTTAGGATGGTCATCTCTGGTGGACTTTTTGA
TCTTCCCGGTGACTGTTATTTTTGTTTCAAGGGGGAAGCATTTATGATTT
TGTAAAACTCTTTCAAATTTTCTGTTGTTTCTTCTCCTTTCCTTCTTCTG
TTGTCACATGATGGACGTTATTTCAAATTGCTTCAGTGAATGCTAATCAG
TGCTAGTGAAAATATATTTAGCCATGTTATGATTATGTTTTGATTATATT
CATTTTAAGTAACTAGTAATTTAAAATTTCTTAAGCCTTGTGAAAAGTAA
AGATAAATCACTTTAGAATAAATCAGGGGATCATGCAGTTACTGTGTGAA
CACCATAGTGTTATAGAGAAACTCTATGACCCCCTGAATAATTGGTAGTT
TAAAATCTTGATGATTGTTACTTTTTTCTCCTAGCAAAATGTCTCGCTCA
GGAAATGATCCAGTACAATGGTTACTTTGGCTGCAGTTTTTGCGAGCTAA
AGGGAGAGCGTGTTCAGTGTACTGGCAAAAAAAAGGGATCAAAGACTGTT
TTTCCACGAAAATCAATCCGCCTGGTTAAAAGAAATAAAGAAAGAGCGTG
TTAAAAACTACTCCAAGAAAACTGAAAAGTATACTAAAGTGAATACGCTA
CATATCTCAACTTCCAAAAACTCGTCAGGGTAAAGAAAATGAAAGTGCTA
AAACTAAATGGAATGTCAAAAATGCAGATATCATTCAGATAGACGTGCAC
CATGTTCATTCTTCTAACAATGTAAAATTTGTATATTTACCTACCTTGTA
AGACTCTTTTTGCGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTT
TGGACTAACAAGCACATTGGGAGCTAAAGTTTTATTTCTACCATATAATT
TTATACCTTTGTTAGAATACCTAGAATCTGTGAAACTCACCCTGGAGGGT
ATTCTTAAGATTTGGCCAATTTTCACCCTGATATTCTTATAAAAGGTATT
TTTATAAAAAAAGCGTGTAATAATTTTCTTTTTTTGAGCAGTTTTATATC
TTTTTCCATTAACCTTTATCTCCTATCTTATTAAGGGAACTTATTTTGGC
GGGAACTAATTTTGCTAACTCGCCAAAATCAGTTTCCACCAAAATTAATT
TTATTTCTTGTCTTGTCTAAATAACCTCTGAAATTCATCAAAGTTGCTCA
AAATAAGGCAAAATAGAGCAGAGTAGATTCACGCTGTCATTCACCAAAAT
TAGTTTTCGTTAAAATTAAAAAATTTCAGGATTTTTGCAGCTCGCCAAAA
TCAGTTCCCGCCGAAATAAGTTCCCTTAAGGTATTTTGGAACTCTAGATA
ATCTTTTTACAAGATTTACCCCCTATGTTTTAAAAAATATGATTTTTAGA
TGATTTTTTCTTTCACTTTAGGTTTTTGGGATCCGTGGATTTTCTATCCT
TGGGGAACTACCACATCTGAATATCATATGGAATTTCCCCTTTGACTATA
TGCATGGTGTATTCTTGGGGGTAGCAAAGTAAGATAATTGCTATTTTTCA
AAATTGAAAATCCAAGTGAAACTAAATCTGAATATAAATGTTGCATTAGC
CTGGAATTATAACCAGGTAGAATTAGTACTAATAATCATATATGAAGGAG
GGCAATTCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024212XLOC_024212Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039984-exon-sc0002260-1575043694:12257..12590TCONS_00039984-exon-sc0002260-1575043694:12257..12590Clytia hemisphaericaexon
TCONS_00039984-exon-sc0002260-1575043694:11587..11674TCONS_00039984-exon-sc0002260-1575043694:11587..11674Clytia hemisphaericaexon
TCONS_00039984-exon-sc0002260-1575043694:9619..9856TCONS_00039984-exon-sc0002260-1575043694:9619..9856Clytia hemisphaericaexon
TCONS_00039984-exon-sc0002260-1575043694:9346..9455TCONS_00039984-exon-sc0002260-1575043694:9346..9455Clytia hemisphaericaexon
TCONS_00039984-exon-sc0002260-1575043694:6581..6819TCONS_00039984-exon-sc0002260-1575043694:6581..6819Clytia hemisphaericaexon
TCONS_00039984-exon-sc0002260-1510915933:12257..12590TCONS_00039984-exon-sc0002260-1510915933:12257..12590Clytia hemisphaericaexon
TCONS_00039984-exon-sc0002260-1510915933:11587..11674TCONS_00039984-exon-sc0002260-1510915933:11587..11674Clytia hemisphaericaexon
TCONS_00039984-exon-sc0002260-1510915933:9619..9856TCONS_00039984-exon-sc0002260-1510915933:9619..9856Clytia hemisphaericaexon
TCONS_00039984-exon-sc0002260-1510915933:9346..9455TCONS_00039984-exon-sc0002260-1510915933:9346..9455Clytia hemisphaericaexon
TCONS_00039984-exon-sc0002260-1510915933:6581..6819TCONS_00039984-exon-sc0002260-1510915933:6581..6819Clytia hemisphaericaexon
TCONS_00039984-exon-sc0002260-1491911889:12257..12590TCONS_00039984-exon-sc0002260-1491911889:12257..12590Clytia hemisphaericaexon
TCONS_00039984-exon-sc0002260-1491911889:11587..11674TCONS_00039984-exon-sc0002260-1491911889:11587..11674Clytia hemisphaericaexon
TCONS_00039984-exon-sc0002260-1491911889:9619..9856TCONS_00039984-exon-sc0002260-1491911889:9619..9856Clytia hemisphaericaexon
TCONS_00039984-exon-sc0002260-1491911889:9346..9455TCONS_00039984-exon-sc0002260-1491911889:9346..9455Clytia hemisphaericaexon
TCONS_00039984-exon-sc0002260-1491911889:6581..6819TCONS_00039984-exon-sc0002260-1491911889:6581..6819Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002260supercontigsc0002260:6581..12590 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.148573	0.0760751	0	0.174661	0	0	0	0.216433	0.198629	0.712023	0.111732	0.107229	0	0.245265	0.232371	0	0	0	0.724237	0.191286	0	0.308219	0	0	0	0	0	0.219641	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039984 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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