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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00039981 ID=TCONS_00039981|Name=TCONS_00039981|organism=Clytia hemisphaerica|type=transcript|length=1965bp
ggtactagggcaaaatgggttacagggatgcgccgctggtcagggtacct
tttttaacctctatAAGTCCCAGGTAGgttcgcaaaaacaccaaagtaga
aaaatcagtccctcgtagggtgctttttttggaaaatgtggggaaaaagt
agaaaatttgggaattttagtcccacttttttcgcaaaaacaagtcccac
gtagggtccatttttccaATCTCAGCAGAACACCCCCGTCAGTcagcaag
ggtagtacccccccggaaCTCAGCAATTGAAGTACNtggttgattttggc
tgctgcacgttttattttgtttcaaactttcaagttttaattaattgtct
tgcgaacttgattcaggtaactctcatccttattgtgcaaatacatcctg
tagatgactgatgttgttttttctgaaagctagatttcctagtgtgacta
actggtaGTACCCCCCGGAACTCAGCAATTGAAGTACACCGCGATCGCAG
GTTATCCCTGACTGTTTATTGCAATTTCATAATAATTTGTAATAATATCT
TTCAAAGATATGGCTGATGAAATAGTCCACATTCACAAATCAAATCCACC
CAAAATTATGTTTTCAAGGCTTTTATTCCTATGTTTACTTGCTAAAATAT
CCAAAGCAAACTGACCTTTTTGTTTATTTAAAAGGTGCTATGGACAATGA
TGATGATACTAGTGACACAGAACTTGATGATTTTGATCCCTTCAAAGAGT
ATAGGTTGTTTAATGAGCCCAAGCCATTAGCAAGAGGGTTAAACATATCT
CTTGAAAATTCACTTATACTACATCTTTCATTTGCCAAGAGACACAACCT
AACCAAAGCAGCACTACAAGATTTGCTCCATTTGACAAATCTCCATCTTG
TTCAGCCAAATGATTTTCCCTTAACACTTGATAAATTATATTCTGGTATT
GGCTTGAGTACAATTGGAGTCTCAAAGAAATATTACtgcaaaaattgttt
tgaacTTCTCTGTGAGAATGATGATCAGTGTCCTTCATGTAATTTTGTTG
GAAAGGACTTCTTTATCTACAACAGTATTGAAGAGCAGCTGAAACGGCAA
TTACAAAGTAATGTCAGTTTTTTATGCTACACATTTTATAGATTCTCAAA
AAAGACAACGCTGTTAGTTATTGAAATTGCAAATTTCAAAgtaaaatcaa
gagaaaattgttttaaagaatttttaattATAAGTACTGTCTTTTTACTC
TTGATGaatgttctttttttatttttgcgatAGTTTATGATAAATATATG
GTTTATGAAACCCTCTCTCAGATGGAAGTGATTGGAAATATCAATTCAAC
TGTTTCTGTTTCTATACTTTTATTTTAGAAACAAGATTCAAAGAAAATCT
CATTGATCCTCGGACACgtgattctaactcaactgtgATAAAGGATGTTT
ATGATGGAAAATTTTATAAAGATCTTATAAAAGatggatattttgaaaat
gatggcaTTAACTTAACTTGTCAATTGAATACTGATGGAGTTAGTTTGTT
CAGAAGTAGTACATTTTCAGTTTGGCCCGTTTATCTGCGAATCAATGAGC
TACCACCCCTGTTGAGAAAATCCAAAGAATTCAAAATACTGCCTGGTTTA
TGGTTTGGCAAAAAGAAGCCGTATATGAGGACCTTTCTGCGACCAATTGT
AGATGCAATGAAAAACTTGTGCAGAGGTTTTTGGGATCCGTGGATTTTCT
ATCCTTGGGGAACTACCACATCTGAATATCATATGGAATTTCCCCTTTGA
CTATATGCATGGTGTATTCTTGGGGGTAGCAAAGTAAGATAAttgctatt
tttcaaaattgaaaatccaAGTGAAACTAAATCTGAATATAAATGTTGCA
TTAGCCTGGAATTATAACCAGGTAGAATTAGTACTAATAATCATATATGA
AGGAGGGCAATTCTG Run BLAST on NCBI transcript from alignment at sc0002260:6581..11234- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00039981 ID=TCONS_00039981|Name=TCONS_00039981|organism=Clytia hemisphaerica|type=transcript|length=4654bp|location=Sequence derived from alignment at sc0002260:6581..11234- (Clytia hemisphaerica)
GGTACTAGGGCAAAATGGGTTACAGGGATGCGCCGCTGGTCAGGGTACCT
TTTTTAACCTCTATAAGTCCCAGGTAGGTTCGCAAAAACACCAAAGTAGA
AAAATCAGTCCCTCGTAGGGTGCTTTTTTTGGAAAATGTGGGGAAAAAGT
AGAAAATTTGGGAATTTTAGTCCCACTTTTTTCGCAAAAACAAGTCCCAC
GTAGGGTCCATTTTTCCAATCTCAGCAGAACACCCCCGTCAGTCAGCAAG
GGTAGTACCCCCCCGGAACTCAGCAATTGAAGTACNTGGTTGATTTTGGC
TGCTGCACGTTTTATTTTGTTTCAAACTTTCAAGTTTTAATTAATTGTCT
TGCGAACTTGATTCAGGTAACTCTCATCCTTATTGTGCAAATACATCCTG
TAGATGACTGATGTTGTTTTTTCTGAAAGCTAGATTTCCTAGTGTGACTA
ACTGGTAGTACCCCCCGGAACTCAGCAATTGAAGTACACCGCGATCGCAG
GTTATCCCTGACTGTTTATTGCAATTTCATAATAATTTGTAATAATATCT
TTCAAAGATATGGCTGATGAAATAGTCCACATTCACAAATCAAATCCACC
CAAAATTATGTTTTCAAGGCTTTTATTCCTATGTTTACTTGCTAAAATAT
CCAAAGCAAACTGACCTTTTTGTTTATTTAAAAGGTGCTATGGACAATGA
TGATGATACTAGTGACACAGAACTTGATGATTTTGATCCCTTCAAAGAGT
ATAGGTTGTTTAATGAGCCCAAGCCATTAGCAAGAGGGTTAAACATATCT
CTTGAAAATTCACTTATACTACATCTTTCATTTGCCAAGAGACACAACCT
AACCAAAGCAGCACTACAAGATTTGCTCCATTTGACAAATCTCCATCTTG
TTCAGCCAAATGATTTTCCCTTAACACTTGATAAATTATATTCTGGTATT
GGCTTGAGTACAATTGGAGTCTCAAAGAAATATTACTGCAAAAATTGTTT
TGAACTTCTCTGTGAGAATGATGATCAGTGTCCTTCATGTAATTTTGTTG
GAAAGGACTTCTTTATCTACAACAGTATTGAAGAGCAGCTGAAACGGCAA
TTACAAAGTAATGTCAGTTTTTTATGCTACACATTTTATAGATTCTCAAA
AAAGACAACGCTGTTAGTTATTGAAATTGCAAATTTCAAAGTAAAATCAA
GAGAAAATTGTTTTAAAGAATTTTTAATTATAAGTACTGTCTTTTTACTC
TTGATGAATGTTCTTTTTTTATTTTTGCGATAGTTTATGATAAATATATG
GTTTATGAAACCCTCTCTCAGATGGAAGTGATTGGAAATATCAATTCAAC
TGTTTCTGTTTCTATACTTTTATTTTAGAAACAAGATTCAAAGAAAATCT
CATTGATCCTCGGACACGTGATTCTAACTCAACTGTGATAAAGGATGTTT
ATGATGGAAAATTTTATAAAGATCTTATAAAAGATGGATATTTTGAAAAT
GATGGCATTAACTTAACTTGTCAATTGAATACTGATGGAGTTAGTTTGTT
CAGAAGTAGTACATTTTCAGTTTGGCCCGTTTATCTGCGAATCAATGAGC
TACCACCCCTGTTGAGGTATACTTTAAAGTTCTTGGAAATATTATAATAC
ATAATTATGCTGAACTTCATGGTGAAGATCAAATTCATAGTTAAAGACCA
GGACCAGGCTTGGCAATATCATTAAAAAATTATGTTTTACATCACTTTGA
AAAATGTCTACCTCTACCTACCTTTTCAGAAAATCCAAAGAATTCAAAAT
ACTGCCTGGTTTATGGTTTGGCAAAAAGAAGCCGTATATGAGGACCTTTC
TGCGACCAATTGTAGATGCAATGAAAAACTTGTGCAGAGGTAAATTAGAG
CTCTTGTTCTTTTTCAATAGATGTTTAACTAACAGTGGAATATTATCATA
TCAATTTTTTTTGACAAAACTTCAACACAAAAGATGAATTCTCAAATCAA
TTTCTTGTGGAATTGTGTTATTAATACCATTTTCACACTTAGTATTAGTG
AATCTCTATTCTTAGAACTTTTATCAATGTGAGAGAAATTTTATCAAATC
ATAAAGTTACAGATATTTTTGTTTTCACTAGCAATTGTATTTAGATAGTC
ATTAGATTATAATGATTTCTTTAGGCTTAGACCTTGAATTAGATGATGGA
TCAAACAAGACCGTTAGGATGGTCATCTCTGGTGGACTTTTTGATCTTCC
CGGTGACTGTTATTTTTGTTTCAAGGGGGAAGCATTTATGATTTTGTAAA
ACTCTTTCAAATTTTCTGTTGTTTCTTCTCCTTTCCTTCTTCTGTTGTCA
CATGATGGACGTTATTTCAAATTGCTTCAGTGAATGCTAATCAGTGCTAG
TGAAAATATATTTAGCCATGTTATGATTATGTTTTGATTATATTCATTTT
AAGTAACTAGTAATTTAAAATTTCTTAAGCCTTGTGAAAAGTAAAGATAA
ATCACTTTAGAATAAATCAGGGGATCATGCAGTTACTGTGTGAACACCAT
AGTGTTATAGAGAAACTCTATGACCCCCTGAATAATTGGTAGTTTAAAAT
CTTGATGATTGTTACTTTTTTCTCCTAGCAAAATGTCTCGCTCAGGAAAT
GATCCAGTACAATGGTTACTTTGGCTGCAGTTTTTGCGAGCTAAAGGGAG
AGCGTGTTCAGTGTACTGGCAAAAAAAAGGGATCAAAGACTGTTTTTCCA
CGAAAATCAATCCGCCTGGTTAAAAGAAATAAAGAAAGAGCGTGTTAAAA
ACTACTCCAAGAAAACTGAAAAGTATACTAAAGTGAATACGCTACATATC
TCAACTTCCAAAAACTCGTCAGGGTAAAGAAAATGAAAGTGCTAAAACTA
AATGGAATGTCAAAAATGCAGATATCATTCAGATAGACGTGCACCATGTT
CATTCTTCTAACAATGTAAAATTTGTATATTTACCTACCTTGTAAGACTC
TTTTTGCGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTTGGACT
AACAAGCACATTGGGAGCTAAAGTTTTATTTCTACCATATAATTTTATAC
CTTTGTTAGAATACCTAGAATCTGTGAAACTCACCCTGGAGGGTATTCTT
AAGATTTGGCCAATTTTCACCCTGATATTCTTATAAAAGGTATTTTTATA
AAAAAAGCGTGTAATAATTTTCTTTTTTTGAGCAGTTTTATATCTTTTTC
CATTAACCTTTATCTCCTATCTTATTAAGGGAACTTATTTTGGCGGGAAC
TAATTTTGCTAACTCGCCAAAATCAGTTTCCACCAAAATTAATTTTATTT
CTTGTCTTGTCTAAATAACCTCTGAAATTCATCAAAGTTGCTCAAAATAA
GGCAAAATAGAGCAGAGTAGATTCACGCTGTCATTCACCAAAATTAGTTT
TCGTTAAAATTAAAAAATTTCAGGATTTTTGCAGCTCGCCAAAATCAGTT
CCCGCCGAAATAAGTTCCCTTAAGGTATTTTGGAACTCTAGATAATCTTT
TTACAAGATTTACCCCCTATGTTTTAAAAAATATGATTTTTAGATGATTT
TTTCTTTCACTTTAGGTTTTTGGGATCCGTGGATTTTCTATCCTTGGGGA
ACTACCACATCTGAATATCATATGGAATTTCCCCTTTGACTATATGCATG
GTGTATTCTTGGGGGTAGCAAAGTAAGATAATTGCTATTTTTCAAAATTG
AAAATCCAAGTGAAACTAAATCTGAATATAAATGTTGCATTAGCCTGGAA
TTATAACCAGGTAGAATTAGTACTAATAATCATATATGAAGGAGGGCAAT
TCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00039981-exon-sc0002260-1575043694:9619..11234 | TCONS_00039981-exon-sc0002260-1575043694:9619..11234 | Clytia hemisphaerica | exon |
| TCONS_00039981-exon-sc0002260-1575043694:9346..9455 | TCONS_00039981-exon-sc0002260-1575043694:9346..9455 | Clytia hemisphaerica | exon |
| TCONS_00039981-exon-sc0002260-1575043694:6581..6819 | TCONS_00039981-exon-sc0002260-1575043694:6581..6819 | Clytia hemisphaerica | exon |
| TCONS_00039981-exon-sc0002260-1510915933:9619..11234 | TCONS_00039981-exon-sc0002260-1510915933:9619..11234 | Clytia hemisphaerica | exon |
| TCONS_00039981-exon-sc0002260-1510915933:9346..9455 | TCONS_00039981-exon-sc0002260-1510915933:9346..9455 | Clytia hemisphaerica | exon |
| TCONS_00039981-exon-sc0002260-1510915933:6581..6819 | TCONS_00039981-exon-sc0002260-1510915933:6581..6819 | Clytia hemisphaerica | exon |
| TCONS_00039981-exon-sc0002260-1491911889:9619..11234 | TCONS_00039981-exon-sc0002260-1491911889:9619..11234 | Clytia hemisphaerica | exon |
| TCONS_00039981-exon-sc0002260-1491911889:9346..9455 | TCONS_00039981-exon-sc0002260-1491911889:9346..9455 | Clytia hemisphaerica | exon |
| TCONS_00039981-exon-sc0002260-1491911889:6581..6819 | TCONS_00039981-exon-sc0002260-1491911889:6581..6819 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002260 | supercontig | sc0002260:6581..11234 - |
Blast
The following BLAST results are available for this feature:
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