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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00039980 ID=TCONS_00039980|Name=TCONS_00039980|organism=Clytia hemisphaerica|type=transcript|length=943bp
TATATATTCCTAAATCAGAGAGTTTATAGAAAAGTTCCTAAAAGGTTGAA
TTCATATATAGATCTTTACATATTTTTACATTATAATAGCTTGTTACTTA
CTTTTGATATAGAACTCGTTACTTCTTAGCAAACGAATATCGCAACTGGT
TTTTCTTCTTTGCTCCAGTGATTCTCCAAAATATATTGCCTGAGCCATAT
TACAGTCACTTCCTTCTACTTGTCcatggaatttttattttgcaaaaGGA
AGAAATATTGACAATGGATTTGAATTTTGCAGAACAGCTTTTGTTTAAGT
TTGTTCGTAAGATGGATGAGGTTTATGGTAATTGGATTCAAATTGCAATT
GTGCAGAAGATTTATTATAATTTTAGGgaaattttcctaagaaaagaTTC
CTCTCTACTTCTCCTCACTTATTTTATGGCAATAAAATTGCCTAGAATTG
TgaaaaagattctatttattgaAAAGACCTCAGGATCATTTACCATATTA
TTCTCAGGTGCCTAATTGAAATTGAGACCCCCCACGAAACAGAGTTGAGG
CAAGAAATTGATATTTTATCATATCCATCTCTTAAAGATAAAGCAGCGTG
TAAAGCAAATGTACACAATGTTGTTCACTACCCAGAGCAAGTTAGATGGA
ATGGACCTTTGTGGGCATCCATGTCTGGTTTTACATATGAAAATTGGAAT
GGAGAATTCAAGTATCTTTTTCATGGGACGCAGCACGTTGATCAGCAGAT
TGTGACGTCGGTGAATGTTCGTCTCCGAATACCCGAGATTGCGAGATCTC
TTACAGAAGGATCCCTCGAGTGGCACTTCTACCATAAACTTATGTCAAGT
GGatttgaAAGTAAGAAATTTTGCTATGGCCCCTTCAAAACTCTGAAATC
TTTGGAGGATGGATGTGACAGACGTAATTTAATAGTTCAAACG Run BLAST on NCBI transcript from alignment at sc0002260:3090..4851- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00039980 ID=TCONS_00039980|Name=TCONS_00039980|organism=Clytia hemisphaerica|type=transcript|length=1762bp|location=Sequence derived from alignment at sc0002260:3090..4851- (Clytia hemisphaerica)
TATATATTCCTAAATCAGAGAGTTTATAGAAAAGTTCCTAAAAGGTTGAA
TTCATATATAGATCTTTACATATTTTTACATTATAATAGCTTGTTACTTA
CTTTTGATATAGAACTCGTTACTTCTTAGCAAACGAATATCGCAACTGGT
TTTTCTTCTTTGCTCCAGTGATTCTCCAAAATATATTGCCTGAGCCATAT
TACAGGTGAGTTGAATCACCAAAATCTTGATTTTTGTTCTACTTAATGTT
TGATGAGGAACCATGGTTACAAAGTTTTTCCCTCTCAGCCATTTTCAAAA
TGACTCTAAAAGAGAAACCAGTAAAAACGAAGAATCTATAGGGCGCATTT
AATGTAAAAATCAATTGTTTGTCGGCAAAGAAATCTGATTTGAACTCAAA
GATCTCTCTGAAATNAAAACGAAGAATCTATAGGGCGCATTTAATGTAAA
AATCAATTGTTTGTCGGCAAAGAAATCTGATTTGAACTCAAAGATCTCTC
TGAAATCACTTTTATGCTTTTTTATAAGAATTGTGTACTTCGGTTGAGGG
TCAAGTTCTGTAAAACTGGGAGGTAGTCTTAGGGGTATTGTTACGATTTG
GTTAATTTTCTCTCTGATATTCTTTGAAAGCTATTTTTATAAAAAGTGTG
TAAATGTTTAACATATTATTTTAGTATTGAAATTATTAACTTGAACGTGA
TTAATTCTTTTCTTTTACAGTCACTTCCTTCTACTTGTCCATGGAATTTT
TATTTTGCAAAAGGAAGAAATATTGACAATGGATTTGAATTTTGCAGAAC
AGCTTTTGTTTAAGTTTGTTCGTAAGATGGATGAGGTTTATGGTAATTGG
ATTCAAATTGCAATTGTGCAGAAGATTTATTATAATTTTAGGGAAATTTT
CCTAAGAAAAGATTCCTCTCTACTTCTCCTCACTTATTTTATGGCAATAA
AATTGCCTAGAATTGTGAAAAAGATTCTATTTATTGAAAAGACCTCAGGA
TCATTTACCATATTATTCTCAGGTGCCTAATTGAAATTGAGACCCCCCAC
GAAACAGAGTTGAGGCAAGAAATTGATATTTTATCATATCCATCTCTTAA
AGATAAAGCAGCGTGTAAAGCAAATGTACACAATGTTGTTCACTACCCAG
AGCAAGTTAGATGGAATGGACCTTTGTGGGCATCCATGTCTGGTTTTACA
TATGAAAATTGGAATGGAGAATTCAAGTATCTTTTTCATGGGACGCAGCA
CGTTGATCAGCAGGTGTGTGTTGAAACACCTTTTTACATTTCAAAAGATT
CTCCCGTCCTTCTAATATCAATGTAAACTTTCAATAATTTTGTTTAATGA
TTTAAAGTATGTTATTCATATTTCTACAGATTGTGACGTCGGTGAATGTT
CGTCTCCGAATACCCGAGATTGCGAGATCTCTTACAGAAGGATCCCTCGA
GTGGCACTTCTACCATAAACTTATGTCAAGTGGGTGAGTAGTTATTTTTA
CGATGTTTAATAATATTTACTAAATTTATATATATGTCAATGATATTGCT
GGTTGAGGAGTTGAGGAATCAATAGAAATTTAAAGAATTTCTGTCCAACT
TCTGTCAGGAGGTTTGGGTGAAAGAGCAGCAATATAATTATATTTTTGAT
TTCTCTTTTTTAATTTTTCAGATTTGAAAGTAAGAAATTTTGCTATGGCC
CCTTCAAAACTCTGAAATCTTTGGAGGATGGATGTGACAGACGTAATTTA
ATAGTTCAAACG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00039980-exon-sc0002260-1575043694:4647..4851 | TCONS_00039980-exon-sc0002260-1575043694:4647..4851 | Clytia hemisphaerica | exon |
| TCONS_00039980-exon-sc0002260-1575043694:3589..4131 | TCONS_00039980-exon-sc0002260-1575043694:3589..4131 | Clytia hemisphaerica | exon |
| TCONS_00039980-exon-sc0002260-1575043694:3369..3472 | TCONS_00039980-exon-sc0002260-1575043694:3369..3472 | Clytia hemisphaerica | exon |
| TCONS_00039980-exon-sc0002260-1575043694:3090..3180 | TCONS_00039980-exon-sc0002260-1575043694:3090..3180 | Clytia hemisphaerica | exon |
| TCONS_00039980-exon-sc0002260-1510915933:4647..4851 | TCONS_00039980-exon-sc0002260-1510915933:4647..4851 | Clytia hemisphaerica | exon |
| TCONS_00039980-exon-sc0002260-1510915933:3589..4131 | TCONS_00039980-exon-sc0002260-1510915933:3589..4131 | Clytia hemisphaerica | exon |
| TCONS_00039980-exon-sc0002260-1510915933:3369..3472 | TCONS_00039980-exon-sc0002260-1510915933:3369..3472 | Clytia hemisphaerica | exon |
| TCONS_00039980-exon-sc0002260-1510915933:3090..3180 | TCONS_00039980-exon-sc0002260-1510915933:3090..3180 | Clytia hemisphaerica | exon |
| TCONS_00039980-exon-sc0002260-1491911889:4647..4851 | TCONS_00039980-exon-sc0002260-1491911889:4647..4851 | Clytia hemisphaerica | exon |
| TCONS_00039980-exon-sc0002260-1491911889:3589..4131 | TCONS_00039980-exon-sc0002260-1491911889:3589..4131 | Clytia hemisphaerica | exon |
| TCONS_00039980-exon-sc0002260-1491911889:3369..3472 | TCONS_00039980-exon-sc0002260-1491911889:3369..3472 | Clytia hemisphaerica | exon |
| TCONS_00039980-exon-sc0002260-1491911889:3090..3180 | TCONS_00039980-exon-sc0002260-1491911889:3090..3180 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002260 | supercontig | sc0002260:3090..4851 - |
Blast
The following BLAST results are available for this feature:
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