TCONS_00039979 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039979
Unique NameTCONS_00039979
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length655

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039979 ID=TCONS_00039979|Name=TCONS_00039979|organism=Clytia hemisphaerica|type=transcript|length=655bp
GAAAAGTTCCTAAAAGGTTGAATTCATATATAGATCTTTACATATTTTTA
CATTATAATAGCTTGTTACTTACTTTTGATATAGAACTCGTTACTTCTTA
GCAAACGAATATCGCAACTGGTTTTTCTTCTTTGCTCCAGTGATTCTCCA
AAATATATTGCCTGAGCCATATTACAGTCACTTCCTTCTACTTGTCcatg
gaatttttattttgcaaaaGGAAGAAATATTGACAATGGATTTGAATTTT
GCAGAACAGCTTTTGTTTAAGTTTGTTCGTAAGATGGATGAGGTTTATGA
TAAAGCAGCGTGTAAAGCAAATGTACACAATGTTGTTCACTACCCAGAGC
AAGTTAGATGGAATGGACCTTTGTGGGCATCCATGTCTGGTTTTACATAT
GAAAATTGGAATGGAGAATTCAAGTATCTTTTTCATGGGACGCAGCACGT
TGATCAGCAGATTGTGACGTCGGTGAATGTTCGTCTCCGAATACCCGAGA
TTGCGAGATCTCTTACAGAAGGATCCCTCGAGTGGCACTTCTACCATAAA
CTTATGTCAAGTGGatttgaAAGTAAGAAATTTTGCTATGGCCCCTTCAA
AACTCTGAAATCTTTGGAGGATGGATGTGACAGACGTAATTTAATAGTTC
AAACG
Run BLAST on NCBI

protein sequence of TCONS_00039979-protein

>TCONS_00039979-protein ID=TCONS_00039979-protein|Name=TCONS_00039979-protein|organism=Clytia hemisphaerica|type=polypeptide|length=140bp
MDLNFAEQLLFKFVRKMDEVYDKAACKANVHNVVHYPEQVRWNGPLWASM
SGFTYENWNGEFKYLFHGTQHVDQQIVTSVNVRLRIPEIARSLTEGSLEW
HFYHKLMSSGFESKKFCYGPFKTLKSLEDGCDRRNLIVQT
Run BLAST on NCBI

transcript from alignment at sc0002260:3090..4823-

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039979 ID=TCONS_00039979|Name=TCONS_00039979|organism=Clytia hemisphaerica|type=transcript|length=1734bp|location=Sequence derived from alignment at sc0002260:3090..4823- (Clytia hemisphaerica)
GAAAAGTTCCTAAAAGGTTGAATTCATATATAGATCTTTACATATTTTTA
CATTATAATAGCTTGTTACTTACTTTTGATATAGAACTCGTTACTTCTTA
GCAAACGAATATCGCAACTGGTTTTTCTTCTTTGCTCCAGTGATTCTCCA
AAATATATTGCCTGAGCCATATTACAGGTGAGTTGAATCACCAAAATCTT
GATTTTTGTTCTACTTAATGTTTGATGAGGAACCATGGTTACAAAGTTTT
TCCCTCTCAGCCATTTTCAAAATGACTCTAAAAGAGAAACCAGTAAAAAC
GAAGAATCTATAGGGCGCATTTAATGTAAAAATCAATTGTTTGTCGGCAA
AGAAATCTGATTTGAACTCAAAGATCTCTCTGAAATNAAAACGAAGAATC
TATAGGGCGCATTTAATGTAAAAATCAATTGTTTGTCGGCAAAGAAATCT
GATTTGAACTCAAAGATCTCTCTGAAATCACTTTTATGCTTTTTTATAAG
AATTGTGTACTTCGGTTGAGGGTCAAGTTCTGTAAAACTGGGAGGTAGTC
TTAGGGGTATTGTTACGATTTGGTTAATTTTCTCTCTGATATTCTTTGAA
AGCTATTTTTATAAAAAGTGTGTAAATGTTTAACATATTATTTTAGTATT
GAAATTATTAACTTGAACGTGATTAATTCTTTTCTTTTACAGTCACTTCC
TTCTACTTGTCCATGGAATTTTTATTTTGCAAAAGGAAGAAATATTGACA
ATGGATTTGAATTTTGCAGAACAGCTTTTGTTTAAGTTTGTTCGTAAGAT
GGATGAGGTTTATGGTAATTGGATTCAAATTGCAATTGTGCAGAAGATTT
ATTATAATTTTAGGGAAATTTTCCTAAGAAAAGATTCCTCTCTACTTCTC
CTCACTTATTTTATGGCAATAAAATTGCCTAGAATTGTGAAAAAGATTCT
ATTTATTGAAAAGACCTCAGGATCATTTACCATATTATTCTCAGGTGCCT
AATTGAAATTGAGACCCCCCACGAAACAGAGTTGAGGCAAGAAATTGATA
TTTTATCATATCCATCTCTTAAAGATAAAGCAGCGTGTAAAGCAAATGTA
CACAATGTTGTTCACTACCCAGAGCAAGTTAGATGGAATGGACCTTTGTG
GGCATCCATGTCTGGTTTTACATATGAAAATTGGAATGGAGAATTCAAGT
ATCTTTTTCATGGGACGCAGCACGTTGATCAGCAGGTGTGTGTTGAAACA
CCTTTTTACATTTCAAAAGATTCTCCCGTCCTTCTAATATCAATGTAAAC
TTTCAATAATTTTGTTTAATGATTTAAAGTATGTTATTCATATTTCTACA
GATTGTGACGTCGGTGAATGTTCGTCTCCGAATACCCGAGATTGCGAGAT
CTCTTACAGAAGGATCCCTCGAGTGGCACTTCTACCATAAACTTATGTCA
AGTGGGTGAGTAGTTATTTTTACGATGTTTAATAATATTTACTAAATTTA
TATATATGTCAATGATATTGCTGGTTGAGGAGTTGAGGAATCAATAGAAA
TTTAAAGAATTTCTGTCCAACTTCTGTCAGGAGGTTTGGGTGAAAGAGCA
GCAATATAATTATATTTTTGATTTCTCTTTTTTAATTTTTCAGATTTGAA
AGTAAGAAATTTTGCTATGGCCCCTTCAAAACTCTGAAATCTTTGGAGGA
TGGATGTGACAGACGTAATTTAATAGTTCAAACG

Coding sequence (CDS) from alignment at sc0002260:3090..4823-

>TCONS_00039979 ID=TCONS_00039979|Name=TCONS_00039979|organism=Clytia hemisphaerica|type=CDS|length=1680bp|location=Sequence derived from alignment at sc0002260:3090..4823- (Clytia hemisphaerica)
ATTTGAAAGTAAGAAATTTTGCTATGGCCCCTTCAAAACTCTGAAATCTT
TGGAGGATGGATGTGACAGACGTAATTTAATAGTTCAAACGATTGTGACG
TCGGTGAATGTTCGTCTCCGAATACCCGAGATTGCGAGATCTCTTACAGA
AGGATCCCTCGAGTGGCACTTCTACCATAAACTTATGTCAAGTGGATAAA
GCAGCGTGTAAAGCAAATGTACACAATGTTGTTCACTACCCAGAGCAAGT
TAGATGGAATGGACCTTTGTGGGCATCCATGTCTGGTTTTACATATGAAA
ATTGGAATGGAGAATTCAAGTATCTTTTTCATGGGACGCAGCACGTTGAT
CAGCAGATGGATTTGAATTTTGCAGAACAGCTTTTGTTTAAGTTTGTTCG
TAAGATGGATGAGGTTTATGATTTGAAAGTAAGAAATTTTGCTATGGCCC
CTTCAAAACTCTGAAATCTTTGGAGGATGGATGTGACAGACGTAATTTAA
TAGTTCAAACGATTGTGACGTCGGTGAATGTTCGTCTCCGAATACCCGAG
ATTGCGAGATCTCTTACAGAAGGATCCCTCGAGTGGCACTTCTACCATAA
ACTTATGTCAAGTGGATAAAGCAGCGTGTAAAGCAAATGTACACAATGTT
GTTCACTACCCAGAGCAAGTTAGATGGAATGGACCTTTGTGGGCATCCAT
GTCTGGTTTTACATATGAAAATTGGAATGGAGAATTCAAGTATCTTTTTC
ATGGGACGCAGCACGTTGATCAGCAGATGGATTTGAATTTTGCAGAACAG
CTTTTGTTTAAGTTTGTTCGTAAGATGGATGAGGTTTATGATTTGAAAGT
AAGAAATTTTGCTATGGCCCCTTCAAAACTCTGAAATCTTTGGAGGATGG
ATGTGACAGACGTAATTTAATAGTTCAAACGATTGTGACGTCGGTGAATG
TTCGTCTCCGAATACCCGAGATTGCGAGATCTCTTACAGAAGGATCCCTC
GAGTGGCACTTCTACCATAAACTTATGTCAAGTGGATAAAGCAGCGTGTA
AAGCAAATGTACACAATGTTGTTCACTACCCAGAGCAAGTTAGATGGAAT
GGACCTTTGTGGGCATCCATGTCTGGTTTTACATATGAAAATTGGAATGG
AGAATTCAAGTATCTTTTTCATGGGACGCAGCACGTTGATCAGCAGATGG
ATTTGAATTTTGCAGAACAGCTTTTGTTTAAGTTTGTTCGTAAGATGGAT
GAGGTTTATGATTTGAAAGTAAGAAATTTTGCTATGGCCCCTTCAAAACT
CTGAAATCTTTGGAGGATGGATGTGACAGACGTAATTTAATAGTTCAAAC
GATTGTGACGTCGGTGAATGTTCGTCTCCGAATACCCGAGATTGCGAGAT
CTCTTACAGAAGGATCCCTCGAGTGGCACTTCTACCATAAACTTATGTCA
AGTGGATAAAGCAGCGTGTAAAGCAAATGTACACAATGTTGTTCACTACC
CAGAGCAAGTTAGATGGAATGGACCTTTGTGGGCATCCATGTCTGGTTTT
ACATATGAAAATTGGAATGGAGAATTCAAGTATCTTTTTCATGGGACGCA
GCACGTTGATCAGCAGATGGATTTGAATTTTGCAGAACAGCTTTTGTTTA
AGTTTGTTCGTAAGATGGATGAGGTTTATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024211XLOC_024211Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039979-exon-sc0002260-1575043694:4647..4823TCONS_00039979-exon-sc0002260-1575043694:4647..4823Clytia hemisphaericaexon
TCONS_00039979-exon-sc0002260-1575043694:4010..4131TCONS_00039979-exon-sc0002260-1575043694:4010..4131Clytia hemisphaericaexon
TCONS_00039979-exon-sc0002260-1575043694:3589..3749TCONS_00039979-exon-sc0002260-1575043694:3589..3749Clytia hemisphaericaexon
TCONS_00039979-exon-sc0002260-1575043694:3369..3472TCONS_00039979-exon-sc0002260-1575043694:3369..3472Clytia hemisphaericaexon
TCONS_00039979-exon-sc0002260-1575043694:3090..3180TCONS_00039979-exon-sc0002260-1575043694:3090..3180Clytia hemisphaericaexon
TCONS_00039979-exon-sc0002260-1510915933:4647..4823TCONS_00039979-exon-sc0002260-1510915933:4647..4823Clytia hemisphaericaexon
TCONS_00039979-exon-sc0002260-1510915933:4010..4131TCONS_00039979-exon-sc0002260-1510915933:4010..4131Clytia hemisphaericaexon
TCONS_00039979-exon-sc0002260-1510915933:3589..3749TCONS_00039979-exon-sc0002260-1510915933:3589..3749Clytia hemisphaericaexon
TCONS_00039979-exon-sc0002260-1510915933:3369..3472TCONS_00039979-exon-sc0002260-1510915933:3369..3472Clytia hemisphaericaexon
TCONS_00039979-exon-sc0002260-1510915933:3090..3180TCONS_00039979-exon-sc0002260-1510915933:3090..3180Clytia hemisphaericaexon
TCONS_00039979-exon-sc0002260-1491911889:4647..4823TCONS_00039979-exon-sc0002260-1491911889:4647..4823Clytia hemisphaericaexon
TCONS_00039979-exon-sc0002260-1491911889:4010..4131TCONS_00039979-exon-sc0002260-1491911889:4010..4131Clytia hemisphaericaexon
TCONS_00039979-exon-sc0002260-1491911889:3589..3749TCONS_00039979-exon-sc0002260-1491911889:3589..3749Clytia hemisphaericaexon
TCONS_00039979-exon-sc0002260-1491911889:3369..3472TCONS_00039979-exon-sc0002260-1491911889:3369..3472Clytia hemisphaericaexon
TCONS_00039979-exon-sc0002260-1491911889:3090..3180TCONS_00039979-exon-sc0002260-1491911889:3090..3180Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039979-proteinTCONS_00039979-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002260supercontigsc0002260:3090..4823 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.856854	1.78294	0.0900666	0	3.46239	2.91287	3.24555	3.55052	1.60878	3.31561	2.41774	1.05457	2.90136	1.61275	2.47717	1.77186	2.61358	2.53497	2.08943	0.767603	1.5866	2.58847	2.32172	1.0487	2.12933	3.33746	2.10339	0.34922	1.35563	1.14492
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039979 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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