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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00039969 ID=TCONS_00039969|Name=TCONS_00039969|organism=Clytia hemisphaerica|type=transcript|length=537bp
NTTTTCCTGATACCTGTAATGCCTACTCTTTTCGATAATGCGAAAGTCAA
GAAGAAGAATCCTATCATCATTATTGTAGAGGTCAACGAAAACGTGGAAA
AAGCTAAATCCAAACGGGCCAACGATGATTCACCTGGCCTGATgattgat
aagaatacaaaaaGAGCCGTTGTTCTTTTGggaagaaatatattttttgt
tcatgaACACATTTTAGaaggttttttgatttttgttggtttgttttatg
TATTGGATCAGGAGTATCCTACTGAACTCACGGTGGCGTTGTCGTTGATC
CACCATTATTCCTTCGGCGATGTGCGTGTGACCGAGAGTGCGGTCGAACG
ATTCGGAATCGTGAAAAAGAAGTTGGATCCATTTAACGCCGAAATCTAAC
AGAAACgttcacattttttataagcaacttcaTTTTTCGGATCAGGGCTG
GGGTTGCTTGGCATTTTAACTCATTTTATGGAAAGTTTGCTTTGACCACA
ACCCTTATCTGGGTCAAGCAAGTTCTATCGTTTGCCG Run BLAST on NCBI protein sequence of TCONS_00039969-protein >TCONS_00039969-protein ID=TCONS_00039969-protein|Name=TCONS_00039969-protein|organism=Clytia hemisphaerica|type=polypeptide|length=132bp
XFLIPVMPTLFDNAKVKKKNPIIIIVEVNENVEKAKSKRANDDSPGLMID
KNTKRAVVLLGRNIFFVHEHILEGFLIFVGLFYVLDQEYPTELTVALSLI
HHYSFGDVRVTESAVERFGIVKKKLDPFNAEI Run BLAST on NCBI transcript from alignment at sc0002259:40105..41409+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00039969 ID=TCONS_00039969|Name=TCONS_00039969|organism=Clytia hemisphaerica|type=transcript|length=1305bp|location=Sequence derived from alignment at sc0002259:40105..41409+ (Clytia hemisphaerica)
NTTTTCCTGATACCTGTAATGCCTACTCTTTTCGATAATGCGAAAGTCAA
GAAGAAGAATCCTATCATCATTATTGTAGAGGTTAGTATAcgttgggctc
ttccagaaaatgtccgtNTATATAGAGACTTATACGCATACATAGTTTTG
CGTTCTTTCAAACCAcatgtaccgtgagattgggtaacttgcatcagtga
aggctatacatacatagccctcaaatgaatgacctggctggtcattaaaa
tacgacTACGCAGCTTCgtttactctaccatttttgttttgatttaactt
tgtattttaatgaccagccaggtctttcatttgagggccaTGCATGTTAT
TAGCCTCCATTGATGCAAGCAAGTTACCCAgccaatctcacggtagttaa
ttcccgtgacaaacaatgatgaatgaatctgtatgggtggtacagtcact
ttctgtcggggttgtggatggcgatGTGTGATATGTCTtcctttgatagt
tagggtttNTTagagtgtccgctaattggagagagAAAACTGTATATCCC
CACTCctatacaaattttttctggaagagcccatatGTTATTCCATCATC
TTCCTTTTACACTCCCATTTTTATCTATTGGCTTGTGCTTAACTCTTCTT
ATAAAGGAGAGTGGGAATCgttttgtttgattattttcttggcTCACGAA
CGATTTTATCTCATTGTGCGGGCGGGGTTACTTGAAATAAAACTAGGTTT
GTTTCGAATCAATGTTcagttttttatttcttcaattttctaaTTATTGT
AATATTACTTTGGTTACAACCAATAAGTAACATTACTTTTATTTGTCAGG
TCAACGAAAACGTGGAAAAAGCTAAATCCAAACGGGCCAACGATGATTCA
CCTGGCCTGATgattgataagaatacaaaaaGAGCCGTTGTTCTTTTGgg
aagaaatatattttttgttcatgaACACATTTTAGaaggttttttgattt
ttgttggtttgttttatgTATTGGATCAGGAGTATCCTACTGAACTCACG
GTGGCGTTGTCGTTGATCCACCATTATTCCTTCGGCGATGTGCGTGTGAC
CGAGAGTGCGGTCGAACGATTCGGAATCGTGAAAAAGAAGTTGGATCCAT
TTAACGCCGAAATCTAACAGAAACgttcacattttttataagcaacttca
TTTTTCGGATCAGGGCTGGGGTTGCTTGGCATTTTAACTCATTTTATGGA
AAGTTTGCTTTGACCACAACCCTTATCTGGGTCAAGCAAGTTCTATCGTT
TGCCG Coding sequence (CDS) from alignment at sc0002259:40105..41409+ >TCONS_00039969 ID=TCONS_00039969|Name=TCONS_00039969|organism=Clytia hemisphaerica|type=CDS|length=798bp|location=Sequence derived from alignment at sc0002259:40105..41409+ (Clytia hemisphaerica)
NTTTTCCTGATACCTGTAATGCCTACTCTTTTCGATAATGCGAAAGTCAA
GAAGAAGAATCCTATCATCATTATTGTAGAGGTCAACGAAAACGTGGAAA
AAGCTAAATCCAAACGGGCCAACGATGATTCACCTGGCCTGATgattgat
aagaatacaaaaaGAGCCGTTGTTCTTTTGggaagaaatatattttttgt
tcatgaACACATTTTAGaaggttttttgatttttgttggtttgttttatg
TATTGGATCAGGAGTATCCTACTGAACTCACGGTGGCGTTGTCGTTGATC
CACCATTATTCCTTCGGCGATGTGCGTGTGACCGAGAGTGCGGTCGAACG
ATTCGGAATCGTGAAAAAGAAGTTGGATCCATTTAACGCCGAAATCTAAN
TTTTCCTGATACCTGTAATGCCTACTCTTTTCGATAATGCGAAAGTCAAG
AAGAAGAATCCTATCATCATTATTGTAGAGGTCAACGAAAACGTGGAAAA
AGCTAAATCCAAACGGGCCAACGATGATTCACCTGGCCTGATgattgata
agaatacaaaaaGAGCCGTTGTTCTTTTGggaagaaatatattttttgtt
catgaACACATTTTAGaaggttttttgatttttgttggtttgttttatgT
ATTGGATCAGGAGTATCCTACTGAACTCACGGTGGCGTTGTCGTTGATCC
ACCATTATTCCTTCGGCGATGTGCGTGTGACCGAGAGTGCGGTCGAACGA
TTCGGAATCGTGAAAAAGAAGTTGGATCCATTTAACGCCGAAATCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00039969-exon-sc0002259-1491911889:40105..40185 | TCONS_00039969-exon-sc0002259-1491911889:40105..40185 | Clytia hemisphaerica | exon |
| TCONS_00039969-exon-sc0002259-1510915933:40105..40185 | TCONS_00039969-exon-sc0002259-1510915933:40105..40185 | Clytia hemisphaerica | exon |
| TCONS_00039969-exon-sc0002259-1575043694:40105..40185 | TCONS_00039969-exon-sc0002259-1575043694:40105..40185 | Clytia hemisphaerica | exon |
| TCONS_00039969-exon-sc0002259-1491911889:40954..41409 | TCONS_00039969-exon-sc0002259-1491911889:40954..41409 | Clytia hemisphaerica | exon |
| TCONS_00039969-exon-sc0002259-1510915933:40954..41409 | TCONS_00039969-exon-sc0002259-1510915933:40954..41409 | Clytia hemisphaerica | exon |
| TCONS_00039969-exon-sc0002259-1575043694:40954..41409 | TCONS_00039969-exon-sc0002259-1575043694:40954..41409 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002259 | supercontig | sc0002259:40105..41409 + |
Blast
The following BLAST results are available for this feature:
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