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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00039968 ID=TCONS_00039968|Name=TCONS_00039968|organism=Clytia hemisphaerica|type=transcript|length=1266bp
AACTTCACAAGGGATGACCTGAATGAAATCCTGCCTGGACCACACAATCT
TCTTCTTAGAAAAAACGTTCTGAAAACTATCCAAGGATTCCAGAACTCGA
ACAAAACGCCACCACCTACACACAATGAACAGTCACCAATCACACCCAAT
GGACAATTATCACCGAATGAACTGTCTCCTCCACTTGCAGTCCCACTCGC
ATTTCCACAGTCGCGTCCAAAACCTTTCTACCCGACAACACAACATCAAC
CTCCGGCAAAACGCTTGATAATGGAAAGCATTAATGTTTCGTCGTTTCAA
TTGTATTCCGATGCTGAGATTGCTTTTTATGAGGGCTCTAAAAAGCCTAA
TATGCCGGACAAACTCATGTATAGGCTTGTGCAAGGGACAGTGGCGAACA
TGATCACTCTCTGTCACCAGCTCGAGCATCAAAGATACCCTTTAATGAGC
GAGTTGGAAAAGATGGCTGAAAAGTTGTGTGAGATTTATCCTTGTCTACT
TGTTGCGAAATCATATGAATCGCTATATCAAAGTCTCAAGCGAAGAGTTC
AAAATGTTAGACCAACTAGAAAGCCCCAAGGCAAAAAAcccaaaagatca
aaattttaccGTCAATCGTTGCTGCTTGGAAATGAAAATGAGGCACACAC
ACTCGGAACAGAAACTGAAACAGAAACAGAAACAACCATTGTTGCCGATC
TTCAACCACCTGCTCAAAGCTTGGAGTCGGATACTGCAACTGTACCATTG
CCTGTCCGCCCAACACCGTTTTCGTTCCACCAATCTGTCAATGGCAATAC
GTACACAAACTTACTTTCCAGTCCATCCCTTTCGCTTCCATCTTTCTCAC
ACTCAGCACATTCAAATTTTACCATTGCTGGTATCACTGGTCAAAACTCT
TCCAACGAACCCGCTATCAGTGAAGATCCATGCTATGTGAGAAATTTAAA
AGGTATAACCAGTGAGTTGGCAAAGCGCAACCCTGATGTGAAGACAATAT
CCATGTATATGGATTTGAGTTACGATCAAAGGAGGAAGGAATTCAAAAGC
CTTAAATTGATGGAACGGATTGGGcttctcaaaaacaaattttctgtCTT
TCAATCCTACCCACAAGAGGTCATTCATGAAGTGAGAAGAACAGTTGACC
GAGAAAGCGAAAATTTTGCCCAAGACGCTGTTGAAAAATTTGGTAAATTC
ATCGAATCGGCAGTGTACTTTGCAACTTCTAagttgaaagattttgtttg
ctCCATAATGTTGCCA Run BLAST on NCBI protein sequence of TCONS_00039968-protein >TCONS_00039968-protein ID=TCONS_00039968-protein|Name=TCONS_00039968-protein|organism=Clytia hemisphaerica|type=polypeptide|length=422bp
NFTRDDLNEILPGPHNLLLRKNVLKTIQGFQNSNKTPPPTHNEQSPITPN
GQLSPNELSPPLAVPLAFPQSRPKPFYPTTQHQPPAKRLIMESINVSSFQ
LYSDAEIAFYEGSKKPNMPDKLMYRLVQGTVANMITLCHQLEHQRYPLMS
ELEKMAEKLCEIYPCLLVAKSYESLYQSLKRRVQNVRPTRKPQGKKPKRS
KFYRQSLLLGNENEAHTLGTETETETETTIVADLQPPAQSLESDTATVPL
PVRPTPFSFHQSVNGNTYTNLLSSPSLSLPSFSHSAHSNFTIAGITGQNS
SNEPAISEDPCYVRNLKGITSELAKRNPDVKTISMYMDLSYDQRRKEFKS
LKLMERIGLLKNKFSVFQSYPQEVIHEVRRTVDRESENFAQDAVEKFGKF
IESAVYFATSKLKDFVCSIMLP Run BLAST on NCBI transcript from alignment at sc0002259:37337..39714+ Legend: exonCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00039968 ID=TCONS_00039968|Name=TCONS_00039968|organism=Clytia hemisphaerica|type=transcript|length=2378bp|location=Sequence derived from alignment at sc0002259:37337..39714+ (Clytia hemisphaerica)
AACTTCACAAGGGATGACCTGAATGAAATCCTGCCTGGACCACACAATCT
TCTTCTTAGAAAAAACGTTCTGAAAACTATCCAAGGATTCCAGGttagtt
ttttgttgtttttattttttttttgtttaattctatgtttagttagacta
gagtctacttctgactgaactttgctttttgatgatttttgatggcgctg
agtccagtgaagtagactaggagcatttggcgaagTCGTCATTTTGAAAG
GAAAGCACTAAAAatccaaattacaaaaaaactacttggagttgagaAAC
ATATTGAAAATGAGAAAGGAACATCAGTAACAGATTTGCAATATCGTATT
cgcaaataaaaacattgtttcatccagtttttaccttccaaaaacaacta
aaatctggtggactgttttacagtccgcctaagcaaaagcatatcgCCAA
ATTCtcccgggccacttatcagcgccatccagcctatcaaaaagctataa
gtggccCCCGGGCTAATGTTTAGTtaatagctttaaaaaaagttgttaCA
TAAGCAAAATTTATACAATGTCAAGTTTTATTAGAGTATACCTTTTTTAA
GCATGCaatcttttttgaatttgtcaagCAGCAAAAGTGTTATCAAGGTT
ATACCAAAGATTTTTGGTATAGAGTGAAACAATGTTATTCTTTTCAACCT
CATATATTTACTTTACAGAACTCGAACAAAACGCCACCACCTACACACAA
TGAACAGTCACCAATCACACCCAATGGACAATTATCACCGAATGAACTGT
CTCCTCCACTTGCAGTCCCACTCGCATTTCCACAGTCGCGTCCAAAACCT
TTCTACCCGACAACACAACATCAACCTCCGGCAAAACGCTTGATAATGGA
AAGCATTAATGTTTCGTCGTTTCAATTGTATTCCGATGCTGAGATTGCTT
TTTATGAGGGCTCTAAAAAGCCTAATATGCCGGACAAACTCATGTATAGG
CTTGTGCAAGGGACAGTGGCGAACATGATCACTCTCTGTCACCAGCTCGA
GCATCAAAGATACCCTTTAATGAGCGAGTTGGAAAAGATGGCTGAAAAGT
TGTGTGAGATTTATCCTTGTCTACTTGTTGCGAAATCATATGTAAGTTTC
TTTTTGATTCTCTCTAAGTTTGAGTCCCGGTTCaggggaactaatttttg
tctTGATATGTTTTGTGAATTTTTAGAAGAATAAATCTTATAGATTTTTA
GGTTTAGAGAAAATTAGAGCTGTTCTGTTACTTAAATTTTTGGTTTGGGG
CCAAAACTCTGCATCTGTTTATTGCTGTTCAAGGTTGAAATCTTTGAAAG
TTTGTactgctttttttttaataaaattttatttgtgTATTTATTTCTTG
ATAGGAATCGCTATATCAAAGTCTCAAGCGAAGAGTTCAAAATGTTAGAC
CAACTAGAAAGCCCCAAGGCAAAAAAcccaaaagatcaaaattttaccGT
CAATCGTTGCTGCTTGGAAATGAAAATGAGGCACACACACTCGGAACAGA
AACTGAAACAGAAACAGAAACAACCATTGTTGCCGATCTTCAACCACCTG
CTCAAAGCTTGGAGTCGGATACTGCAACTGTACCATTGCCTGTCCGCCCA
ACACCGTTTTCGTTCCACCAATCTGTCAATGGCAATACGTACACAAACTT
ACTTTCCAGTCCATCCCTTTCGCTTCCATCTTTCTCACACTCAGCACATT
CAAATTTTACCATTGCTGGTATCACTGGTCAAAACTCTTCCAACGAACCC
GCTATCAGTGAAGATCCATGCTATGTGAGAAATTTAAAAGGTATAACCAG
TGAGTTGGCAAAGCGCAACCCTGATGTGAAGACAATATCCATGTATATGG
ATTTGAGTTACGATCAAAGGAGGAAGGAATTCAAAAGCCTTAAATTGATG
GAACGGATTGGGcttctcaaaaacaaattttctgtCTTTCAATCCTACCC
ACAAGAGGTAAGTCCAGTAAAAAGCTTTAGTGTAAACTTGCTAAAGACCT
GTCGTCATTTGTCAACATAATGCTGAATTTCCtaaatttcttccttttat
ttggTTTTGCTTGCTAACTTGCACAGATTTAAATgctgatttcaaaattg
aatCAGAAAGAAAACATAATAgggtgtttgttttttttttcatccagTTT
GTCacgaattatttttttctttacttttcagGTCATTCATGAAGTGAGAA
GAACAGTTGACCGAGAAAGCGAAAATTTTGCCCAAGACGCTGTTGAAAAA
TTTGGTAAATTCATCGAATCGGCAGTGTACTTTGCAACTTCTAagttgaa
agattttgtttgctCCATAATGTTGCCA Coding sequence (CDS) from alignment at sc0002259:37337..39714+ >TCONS_00039968 ID=TCONS_00039968|Name=TCONS_00039968|organism=Clytia hemisphaerica|type=CDS|length=5064bp|location=Sequence derived from alignment at sc0002259:37337..39714+ (Clytia hemisphaerica)
AACTTCACAAGGGATGACCTGAATGAAATCCTGCCTGGACCACACAATCT
TCTTCTTAGAAAAAACGTTCTGAAAACTATCCAAGGATTCCAGAACTCGA
ACAAAACGCCACCACCTACACACAATGAACAGTCACCAATCACACCCAAT
GGACAATTATCACCGAATGAACTGTCTCCTCCACTTGCAGTCCCACTCGC
ATTTCCACAGTCGCGTCCAAAACCTTTCTACCCGACAACACAACATCAAC
CTCCGGCAAAACGCTTGATAATGGAAAGCATTAATGTTTCGTCGTTTCAA
TTGTATTCCGATGCTGAGATTGCTTTTTATGAGGGCTCTAAAAAGCCTAA
TATGCCGGACAAACTCATGTATAGGCTTGTGCAAGGGACAGTGGCGAACA
TGATCACTCTCTGTCACCAGCTCGAGCATCAAAGATACCCTTTAATGAGC
GAGTTGGAAAAGATGGCTGAAAAGTTGTGTGAGATTTATCCTTGTCTACT
TGTTGCGAAATCATATGAATCGCTATATCAAAGTCTCAAGCGAAGAGTTC
AAAATGTTAGACCAACTAGAAAGCCCCAAGGCAAAAAAcccaaaagatca
aaattttaccGTCAATCGTTGCTGCTTGGAAATGAAAATGAGGCACACAC
ACTCGGAACAGAAACTGAAACAGAAACAGAAACAACCATTGTTGCCGATC
TTCAACCACCTGCTCAAAGCTTGGAGTCGGATACTGCAACTGTACCATTG
CCTGTCCGCCCAACACCGTTTTCGTTCCACCAATCTGTCAATGGCAATAC
GTACACAAACTTACTTTCCAGTCCATCCCTTTCGCTTCCATCTTTCTCAC
ACTCAGCACATTCAAATTTTACCATTGCTGGTATCACTGGTCAAAACTCT
TCCAACGAACCCGCTATCAGTGAAGATCCATGCTATGTGAGAAATTTAAA
AGGTATAACCAGTGAGTTGGCAAAGCGCAACCCTGATGTGAAGACAATAT
CCATGTATATGGATTTGAGTTACGATCAAAGGAGGAAGGAATTCAAAAGC
CTTAAATTGATGGAACGGATTGGGcttctcaaaaacaaattttctgtCTT
TCAATCCTACCCACAAGAGGTCATTCATGAAGTGAGAAGAACAGTTGACC
GAGAAAGCGAAAATTTTGCCCAAGACGCTGTTGAAAAATTTGGTAAATTC
ATCGAATCGGCAGTGTACTTTGCAACTTCTAagttgaaagattttgtttg
ctCCATAATGTTGCCAAACTTCACAAGGGATGACCTGAATGAAATCCTGC
CTGGACCACACAATCTTCTTCTTAGAAAAAACGTTCTGAAAACTATCCAA
GGATTCCAGAACTCGAACAAAACGCCACCACCTACACACAATGAACAGTC
ACCAATCACACCCAATGGACAATTATCACCGAATGAACTGTCTCCTCCAC
TTGCAGTCCCACTCGCATTTCCACAGTCGCGTCCAAAACCTTTCTACCCG
ACAACACAACATCAACCTCCGGCAAAACGCTTGATAATGGAAAGCATTAA
TGTTTCGTCGTTTCAATTGTATTCCGATGCTGAGATTGCTTTTTATGAGG
GCTCTAAAAAGCCTAATATGCCGGACAAACTCATGTATAGGCTTGTGCAA
GGGACAGTGGCGAACATGATCACTCTCTGTCACCAGCTCGAGCATCAAAG
ATACCCTTTAATGAGCGAGTTGGAAAAGATGGCTGAAAAGTTGTGTGAGA
TTTATCCTTGTCTACTTGTTGCGAAATCATATGAATCGCTATATCAAAGT
CTCAAGCGAAGAGTTCAAAATGTTAGACCAACTAGAAAGCCCCAAGGCAA
AAAAcccaaaagatcaaaattttaccGTCAATCGTTGCTGCTTGGAAATG
AAAATGAGGCACACACACTCGGAACAGAAACTGAAACAGAAACAGAAACA
ACCATTGTTGCCGATCTTCAACCACCTGCTCAAAGCTTGGAGTCGGATAC
TGCAACTGTACCATTGCCTGTCCGCCCAACACCGTTTTCGTTCCACCAAT
CTGTCAATGGCAATACGTACACAAACTTACTTTCCAGTCCATCCCTTTCG
CTTCCATCTTTCTCACACTCAGCACATTCAAATTTTACCATTGCTGGTAT
CACTGGTCAAAACTCTTCCAACGAACCCGCTATCAGTGAAGATCCATGCT
ATGTGAGAAATTTAAAAGGTATAACCAGTGAGTTGGCAAAGCGCAACCCT
GATGTGAAGACAATATCCATGTATATGGATTTGAGTTACGATCAAAGGAG
GAAGGAATTCAAAAGCCTTAAATTGATGGAACGGATTGGGcttctcaaaa
acaaattttctgtCTTTCAATCCTACCCACAAGAGGTCATTCATGAAGTG
AGAAGAACAGTTGACCGAGAAAGCGAAAATTTTGCCCAAGACGCTGTTGA
AAAATTTGGTAAATTCATCGAATCGGCAGTGTACTTTGCAACTTCTAagt
tgaaagattttgtttgctCCATAATGTTGCCAAACTTCACAAGGGATGAC
CTGAATGAAATCCTGCCTGGACCACACAATCTTCTTCTTAGAAAAAACGT
TCTGAAAACTATCCAAGGATTCCAGAACTCGAACAAAACGCCACCACCTA
CACACAATGAACAGTCACCAATCACACCCAATGGACAATTATCACCGAAT
GAACTGTCTCCTCCACTTGCAGTCCCACTCGCATTTCCACAGTCGCGTCC
AAAACCTTTCTACCCGACAACACAACATCAACCTCCGGCAAAACGCTTGA
TAATGGAAAGCATTAATGTTTCGTCGTTTCAATTGTATTCCGATGCTGAG
ATTGCTTTTTATGAGGGCTCTAAAAAGCCTAATATGCCGGACAAACTCAT
GTATAGGCTTGTGCAAGGGACAGTGGCGAACATGATCACTCTCTGTCACC
AGCTCGAGCATCAAAGATACCCTTTAATGAGCGAGTTGGAAAAGATGGCT
GAAAAGTTGTGTGAGATTTATCCTTGTCTACTTGTTGCGAAATCATATGA
ATCGCTATATCAAAGTCTCAAGCGAAGAGTTCAAAATGTTAGACCAACTA
GAAAGCCCCAAGGCAAAAAAcccaaaagatcaaaattttaccGTCAATCG
TTGCTGCTTGGAAATGAAAATGAGGCACACACACTCGGAACAGAAACTGA
AACAGAAACAGAAACAACCATTGTTGCCGATCTTCAACCACCTGCTCAAA
GCTTGGAGTCGGATACTGCAACTGTACCATTGCCTGTCCGCCCAACACCG
TTTTCGTTCCACCAATCTGTCAATGGCAATACGTACACAAACTTACTTTC
CAGTCCATCCCTTTCGCTTCCATCTTTCTCACACTCAGCACATTCAAATT
TTACCATTGCTGGTATCACTGGTCAAAACTCTTCCAACGAACCCGCTATC
AGTGAAGATCCATGCTATGTGAGAAATTTAAAAGGTATAACCAGTGAGTT
GGCAAAGCGCAACCCTGATGTGAAGACAATATCCATGTATATGGATTTGA
GTTACGATCAAAGGAGGAAGGAATTCAAAAGCCTTAAATTGATGGAACGG
ATTGGGcttctcaaaaacaaattttctgtCTTTCAATCCTACCCACAAGA
GGTCATTCATGAAGTGAGAAGAACAGTTGACCGAGAAAGCGAAAATTTTG
CCCAAGACGCTGTTGAAAAATTTGGTAAATTCATCGAATCGGCAGTGTAC
TTTGCAACTTCTAagttgaaagattttgtttgctCCATAATGTTGCCAAA
CTTCACAAGGGATGACCTGAATGAAATCCTGCCTGGACCACACAATCTTC
TTCTTAGAAAAAACGTTCTGAAAACTATCCAAGGATTCCAGAACTCGAAC
AAAACGCCACCACCTACACACAATGAACAGTCACCAATCACACCCAATGG
ACAATTATCACCGAATGAACTGTCTCCTCCACTTGCAGTCCCACTCGCAT
TTCCACAGTCGCGTCCAAAACCTTTCTACCCGACAACACAACATCAACCT
CCGGCAAAACGCTTGATAATGGAAAGCATTAATGTTTCGTCGTTTCAATT
GTATTCCGATGCTGAGATTGCTTTTTATGAGGGCTCTAAAAAGCCTAATA
TGCCGGACAAACTCATGTATAGGCTTGTGCAAGGGACAGTGGCGAACATG
ATCACTCTCTGTCACCAGCTCGAGCATCAAAGATACCCTTTAATGAGCGA
GTTGGAAAAGATGGCTGAAAAGTTGTGTGAGATTTATCCTTGTCTACTTG
TTGCGAAATCATATGAATCGCTATATCAAAGTCTCAAGCGAAGAGTTCAA
AATGTTAGACCAACTAGAAAGCCCCAAGGCAAAAAAcccaaaagatcaaa
attttaccGTCAATCGTTGCTGCTTGGAAATGAAAATGAGGCACACACAC
TCGGAACAGAAACTGAAACAGAAACAGAAACAACCATTGTTGCCGATCTT
CAACCACCTGCTCAAAGCTTGGAGTCGGATACTGCAACTGTACCATTGCC
TGTCCGCCCAACACCGTTTTCGTTCCACCAATCTGTCAATGGCAATACGT
ACACAAACTTACTTTCCAGTCCATCCCTTTCGCTTCCATCTTTCTCACAC
TCAGCACATTCAAATTTTACCATTGCTGGTATCACTGGTCAAAACTCTTC
CAACGAACCCGCTATCAGTGAAGATCCATGCTATGTGAGAAATTTAAAAG
GTATAACCAGTGAGTTGGCAAAGCGCAACCCTGATGTGAAGACAATATCC
ATGTATATGGATTTGAGTTACGATCAAAGGAGGAAGGAATTCAAAAGCCT
TAAATTGATGGAACGGATTGGGcttctcaaaaacaaattttctgtCTTTC
AATCCTACCCACAAGAGGTCATTCATGAAGTGAGAAGAACAGTTGACCGA
GAAAGCGAAAATTTTGCCCAAGACGCTGTTGAAAAATTTGGTAAATTCAT
CGAATCGGCAGTGTACTTTGCAACTTCTAagttgaaagattttgtttgct
CCATAATGTTGCCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00039968-exon-sc0002259-1491911889:37337..37429 | TCONS_00039968-exon-sc0002259-1491911889:37337..37429 | Clytia hemisphaerica | exon |
| TCONS_00039968-exon-sc0002259-1510915933:37337..37429 | TCONS_00039968-exon-sc0002259-1510915933:37337..37429 | Clytia hemisphaerica | exon |
| TCONS_00039968-exon-sc0002259-1575043694:37337..37429 | TCONS_00039968-exon-sc0002259-1575043694:37337..37429 | Clytia hemisphaerica | exon |
| TCONS_00039968-exon-sc0002259-1491911889:38055..38477 | TCONS_00039968-exon-sc0002259-1491911889:38055..38477 | Clytia hemisphaerica | exon |
| TCONS_00039968-exon-sc0002259-1510915933:38055..38477 | TCONS_00039968-exon-sc0002259-1510915933:38055..38477 | Clytia hemisphaerica | exon |
| TCONS_00039968-exon-sc0002259-1575043694:38055..38477 | TCONS_00039968-exon-sc0002259-1575043694:38055..38477 | Clytia hemisphaerica | exon |
| TCONS_00039968-exon-sc0002259-1491911889:38741..39343 | TCONS_00039968-exon-sc0002259-1491911889:38741..39343 | Clytia hemisphaerica | exon |
| TCONS_00039968-exon-sc0002259-1510915933:38741..39343 | TCONS_00039968-exon-sc0002259-1510915933:38741..39343 | Clytia hemisphaerica | exon |
| TCONS_00039968-exon-sc0002259-1575043694:38741..39343 | TCONS_00039968-exon-sc0002259-1575043694:38741..39343 | Clytia hemisphaerica | exon |
| TCONS_00039968-exon-sc0002259-1491911889:39568..39714 | TCONS_00039968-exon-sc0002259-1491911889:39568..39714 | Clytia hemisphaerica | exon |
| TCONS_00039968-exon-sc0002259-1510915933:39568..39714 | TCONS_00039968-exon-sc0002259-1510915933:39568..39714 | Clytia hemisphaerica | exon |
| TCONS_00039968-exon-sc0002259-1575043694:39568..39714 | TCONS_00039968-exon-sc0002259-1575043694:39568..39714 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002259 | supercontig | sc0002259:37337..39714 + |
Blast
The following BLAST results are available for this feature:
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