TCONS_00039966 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039966
Unique NameTCONS_00039966
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length321

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039966 ID=TCONS_00039966|Name=TCONS_00039966|organism=Clytia hemisphaerica|type=transcript|length=321bp
CTTCACGGCACTGGAAgtgtttcacaaaaaaatcCTTAAGAGAAGTTTGA
GGCGAGTGGGTTTTTCCGTAGCGCGAGCTACAGACGGGGGTCACCCCATA
CCATTAACTTTCCCTTAGCGCTTTCCACCCGAATCTAtttgattaaagaa
tttttcagattaggaaagaaaaaacatttatcttgTGTTAAAATGTTAAc
attggttaaaaaatattgtaaacTTAAAGGAAATATTTGCATTTTAAGTG
CATATATTTCAACTTCCTGAAAAAAGTAGAAGGCTCTAGTCAGCGAACGC
GGTGCATTTCGAAAGCTAAAC
Run BLAST on NCBI

transcript from alignment at sc0002257:9951..10271

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039966 ID=TCONS_00039966|Name=TCONS_00039966|organism=Clytia hemisphaerica|type=transcript|length=321bp|location=Sequence derived from alignment at sc0002257:9951..10271 (Clytia hemisphaerica)
GTTTAGCTTTCGAAATGCACCGCGTTCGCTGACTAGAGCCTTCTACTTTT
TTCAGGAAGTTGAAATATATGCACTTAAAATGCAAATATTTCCTTTAAgt
ttacaatattttttaaccaatgTTAACATTTTAACAcaagataaatgttt
tttctttcctaatctgaaaaattctttaatcaaaTAGATTCGGGTGGAAA
GCGCTAAGGGAAAGTTAATGGTATGGGGTGACCCCCGTCTGTAGCTCGCG
CTACGGAAAAACCCACTCGCCTCAAACTTCTCTTAAGgatttttttgtga
aacacTTCCAGTGCCGTGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024203XLOC_024203Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039966-exon-sc0002257-1491911889:9951..10271TCONS_00039966-exon-sc0002257-1491911889:9951..10271Clytia hemisphaericaexon
TCONS_00039966-exon-sc0002257-1510915933:9951..10271TCONS_00039966-exon-sc0002257-1510915933:9951..10271Clytia hemisphaericaexon
TCONS_00039966-exon-sc0002257-1575043694:9951..10271TCONS_00039966-exon-sc0002257-1575043694:9951..10271Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002257supercontigsc0002257:9951..10271 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.316732	0.308863	0.71724	1.75427	0.42713	0.337524	1.22163	0.762447	0.800711	1.32241	0	0.843766	0.421297	1.0938	1.0791	0.77203	0.237769	0	0	0.352325	1.22494	0.448111	0	0.330164	0.340061	1.51748	0	0	0.351547	0.716343
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039966 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top