|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00039964 ID=TCONS_00039964|Name=TCONS_00039964|organism=Clytia hemisphaerica|type=transcript|length=1091bp
TTGTTATCATAAGAGAGAACTTTCTCATCTTCAGCTGGTCGAATTCGAGA
AACAAAGTCAATTATACGTAAGGCTTTACCTCTAGTTACATCATTTGCAC
GAGTTGGACGAAGGAACAGTTCATTGTGAGAGATTGGACGGTTAGCCAGG
AGCGAGTCTTGCGAAGCCAAACCAGAATTCAAATGAGGAAGGGAAGCAGC
AACATCAAACGAAGAACCAGAGAGATGCGAttgtgtttgttgttgttgtg
gttgagCAAGGAGCGGACGGTGGAGCAAAGTAGACATAGTGTCAGTCGAA
GAGcgattcaaaatggcggatcgTGACGAATGGGTTTCCTCTGAGCGAGA
AGAAACGGGCGGAGTGGCGGAACGAGAAGAGAGGGTTCTTGAAGCTTTCA
AACGTTCCAGTTTTTCTGTTTGACGTTTAATCTCATCCctcaaaacattt
tcttcgcGAATCTGATTTTCTTGATCTTTCCTAATTGATTCTAGGAGTTC
ATTCTCTTGATCCTTCAAGAATTGTAAGTGGCGGCGATATTGATCGATCT
GATCCGAGGACAACCCAGCATCAGGGTTTTCCCTGGGGTTTGGGGTTTGT
TGTTGTCTGCGTTGTTCGGTACGACCAGCACGAGAAGTATCAGTAGGACT
AGGAGAGGAAGATGGCGACACTGGTCCTTGACAATTCTTGCTTGGAGGAC
CAAAGGTATGATCATCATGGGTCCTCTGACAGCCAGGGCATTTCTTTTTA
CGTGTCCCACTTCCCTCAGTGGTGGGTGGAGGAGTACCAGGTGGTGTGGT
CAAGAACATTAGGATAGTGAAGCATAATCTTTCGGCAAGCATGTTGAAGT
AGAGTTTACAACAGTATAAAGAGTAGATAGAACAGGATACAGAACAGCAA
AACTACAGCAGTCAGCACTAAtaaatgaagaactgaaaaagggcCATGTG
AAGAAACTGAGGCCTTATATAGACATGAGAGTGAGGCTGAGCCAAGAGTC
CggataaaaccaaaacaaaccaaatgcatctaaactctgatatacaAACA
TATATCAGAAACTTAAACACAAGTGGTCGAAAGGGGGACTA Run BLAST on NCBI protein sequence of TCONS_00039964-protein >TCONS_00039964-protein ID=TCONS_00039964-protein|Name=TCONS_00039964-protein|organism=Clytia hemisphaerica|type=polypeptide|length=280bp
MLAERLCFTILMFLTTPPGTPPPTTEGSGTRKKKCPGCQRTHDDHTFGPP
SKNCQGPVSPSSSPSPTDTSRAGRTEQRRQQQTPNPRENPDAGLSSDQID
QYRRHLQFLKDQENELLESIRKDQENQIREENVLRDEIKRQTEKLERLKA
SRTLSSRSATPPVSSRSEETHSSRSAILNRSSTDTMSTLLHRPLLAQPQQ
QQTQSHLSGSSFDVAASLPHLNSGLASQDSLLANRPISHNELFLRPTRAN
DVTRGKALRIIDFVSRIRPAEDEKVLSYDN Run BLAST on NCBI transcript from alignment at sc0002257:1646..2736 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00039964 ID=TCONS_00039964|Name=TCONS_00039964|organism=Clytia hemisphaerica|type=transcript|length=1091bp|location=Sequence derived from alignment at sc0002257:1646..2736 (Clytia hemisphaerica)
TAGTCCCCCTTTCGACCACTTGTGTTTAAGTTTCTGATATATGTTtgtat
atcagagtttagatgcatttggtttgttttggttttatccGGACTCTTGG
CTCAGCCTCACTCTCATGTCTATATAAGGCCTCAGTTTCTTCACATGgcc
ctttttcagttcttcatttaTTAGTGCTGACTGCTGTAGTTTTGCTGTTC
TGTATCCTGTTCTATCTACTCTTTATACTGTTGTAAACTCTACTTCAACA
TGCTTGCCGAAAGATTATGCTTCACTATCCTAATGTTCTTGACCACACCA
CCTGGTACTCCTCCACCCACCACTGAGGGAAGTGGGACACGTAAAAAGAA
ATGCCCTGGCTGTCAGAGGACCCATGATGATCATACCTTTGGTCCTCCAA
GCAAGAATTGTCAAGGACCAGTGTCGCCATCTTCCTCTCCTAGTCCTACT
GATACTTCTCGTGCTGGTCGTACCGAACAACGCAGACAACAACAAACCCC
AAACCCCAGGGAAAACCCTGATGCTGGGTTGTCCTCGGATCAGATCGATC
AATATCGCCGCCACTTACAATTCTTGAAGGATCAAGAGAATGAACTCCTA
GAATCAATTAGGAAAGATCAAGAAAATCAGATTCgcgaagaaaatgtttt
gagGGATGAGATTAAACGTCAAACAGAAAAACTGGAACGTTTGAAAGCTT
CAAGAACCCTCTCTTCTCGTTCCGCCACTCCGCCCGTTTCTTCTCGCTCA
GAGGAAACCCATTCGTCAcgatccgccattttgaatcgCTCTTCGACTGA
CACTATGTCTACTTTGCTCCACCGTCCGCTCCTTGctcaaccacaacaac
aacaaacacaaTCGCATCTCTCTGGTTCTTCGTTTGATGTTGCTGCTTCC
CTTCCTCATTTGAATTCTGGTTTGGCTTCGCAAGACTCGCTCCTGGCTAA
CCGTCCAATCTCTCACAATGAACTGTTCCTTCGTCCAACTCGTGCAAATG
ATGTAACTAGAGGTAAAGCCTTACGTATAATTGACTTTGTTTCTCGAATT
CGACCAGCTGAAGATGAGAAAGTTCTCTCTTATGATAACAA Coding sequence (CDS) from alignment at sc0002257:1646..2736 >TCONS_00039964 ID=TCONS_00039964|Name=TCONS_00039964|organism=Clytia hemisphaerica|type=CDS|length=840bp|location=Sequence derived from alignment at sc0002257:1646..2736 (Clytia hemisphaerica)
ATGCTTGCCGAAAGATTATGCTTCACTATCCTAATGTTCTTGACCACACC
ACCTGGTACTCCTCCACCCACCACTGAGGGAAGTGGGACACGTAAAAAGA
AATGCCCTGGCTGTCAGAGGACCCATGATGATCATACCTTTGGTCCTCCA
AGCAAGAATTGTCAAGGACCAGTGTCGCCATCTTCCTCTCCTAGTCCTAC
TGATACTTCTCGTGCTGGTCGTACCGAACAACGCAGACAACAACAAACCC
CAAACCCCAGGGAAAACCCTGATGCTGGGTTGTCCTCGGATCAGATCGAT
CAATATCGCCGCCACTTACAATTCTTGAAGGATCAAGAGAATGAACTCCT
AGAATCAATTAGGAAAGATCAAGAAAATCAGATTCgcgaagaaaatgttt
tgagGGATGAGATTAAACGTCAAACAGAAAAACTGGAACGTTTGAAAGCT
TCAAGAACCCTCTCTTCTCGTTCCGCCACTCCGCCCGTTTCTTCTCGCTC
AGAGGAAACCCATTCGTCAcgatccgccattttgaatcgCTCTTCGACTG
ACACTATGTCTACTTTGCTCCACCGTCCGCTCCTTGctcaaccacaacaa
caacaaacacaaTCGCATCTCTCTGGTTCTTCGTTTGATGTTGCTGCTTC
CCTTCCTCATTTGAATTCTGGTTTGGCTTCGCAAGACTCGCTCCTGGCTA
ACCGTCCAATCTCTCACAATGAACTGTTCCTTCGTCCAACTCGTGCAAAT
GATGTAACTAGAGGTAAAGCCTTACGTATAATTGACTTTGTTTCTCGAAT
TCGACCAGCTGAAGATGAGAAAGTTCTCTCTTATGATAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00039964-exon-sc0002257-1491911889:1646..2736 | TCONS_00039964-exon-sc0002257-1491911889:1646..2736 | Clytia hemisphaerica | exon |
| TCONS_00039964-exon-sc0002257-1510915933:1646..2736 | TCONS_00039964-exon-sc0002257-1510915933:1646..2736 | Clytia hemisphaerica | exon |
| TCONS_00039964-exon-sc0002257-1575043694:1646..2736 | TCONS_00039964-exon-sc0002257-1575043694:1646..2736 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002257 | supercontig | sc0002257:1646..2736 . |
Blast
The following BLAST results are available for this feature:
|
