|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00039955 ID=TCONS_00039955|Name=TCONS_00039955|organism=Clytia hemisphaerica|type=transcript|length=1061bp
NTTTCATAGCTAACTTTCTGCCTCCTCCAGTTTCACAAAATCACGCAACA
TAGCTTGGTCTaccatttctatttttgaaaaatgttgcgtCATACCAAAA
CAAACCTCGATTGTTTCTTATCGGAAATTTCACGCTGATTCCGATTTTTT
AATCGGTTTTGCCGTACCTCTGACGGTTGGGGCGTTATCCGACCAAATAT
AAAGGTCACCTTAAAaacgtatcagatacgtctttcggaacgtatggcga
acgtatcagatacgcctttcggaacgtatggcgaacgtatcagatacgtc
tttcgggGCGGAAAGGTTAAACCGGCCATAAATCGTAGCAGCAATCATAT
TTTCGGAGGCGTCACTGAAGCTGTGGATCTGTACATTCGTAATAGGGTCG
TTGGGGTCGTCGAAGCAATAATTTCGATCAATTTCAATGGAGTCTATCTC
CTTAAATTCATTCAAAATGGACTTCCACTCTTTCATGAGGTCAGGGGGTA
ACAGTTCATCCCACTTGCATTTTGCATAACAAACTTTCTGATgcaaaatt
atcattttgacTGTAATTGTGCTTATCAGTCCCAAGAGATCATAAATAGA
AGCAATCGAAGCTAAAAGCGACCTTCGAGTTGCATTTTGTGTAAACTTTG
ATCTCATTTCAGCAAAGTTAAAAATAATCTTGTCGGAATTTTTATCCCAT
TTAATCCCTAAAATTTTCTCTTCCCCGTTATATCGTTTGTCGCCAGGGAA
ACGTTCAAAAATCTTTCTCTCAAGTTCATCACTGTTTGAacgaaattttc
ttaaattaaaTCCTCCCTTCTCAAGACACTCCTTCGCGGTGAGGTAAAGA
GATTCAgcttgtttgattgtttttgcaCCACTATTGAGATTATCAACATG
AAGAGctcctttcaaaatttctttcaaatcatcCTCACAATGGGTTTCGA
TGTGTTTTTGAAGTGTCGCTGGCAATAAAAAGGGCGAGGAATTCAAACCA
AAAATAACACGTGTAAATCGTAATTCAATAAGTTCATTGTTCTCAAAGTT
TTCGAAGTCAA Run BLAST on NCBI protein sequence of TCONS_00039955-protein >TCONS_00039955-protein ID=TCONS_00039955-protein|Name=TCONS_00039955-protein|organism=Clytia hemisphaerica|type=polypeptide|length=267bp
DFENFENNELIELRFTRVIFGLNSSPFLLPATLQKHIETHCEDDLKEILK
GALHVDNLNSGAKTIKQAESLYLTAKECLEKGGFNLRKFRSNSDELERKI
FERFPGDKRYNGEEKILGIKWDKNSDKIIFNFAEMRSKFTQNATRRSLLA
SIASIYDLLGLISTITVKMIILHQKVCYAKCKWDELLPPDLMKEWKSILN
EFKEIDSIEIDRNYCFDDPNDPITNVQIHSFSDASENMIAATIYGRFNLS
APKDVSDTFAIRSERRI Run BLAST on NCBI transcript from alignment at sc0002255:2..1062 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00039955 ID=TCONS_00039955|Name=TCONS_00039955|organism=Clytia hemisphaerica|type=transcript|length=1061bp|location=Sequence derived from alignment at sc0002255:2..1062 (Clytia hemisphaerica)
TTGACTTCGAAAACTTTGAGAACAATGAACTTATTGAATTACGATTTACA
CGTGTTATTTTTGGTTTGAATTCCTCGCCCTTTTTATTGCCAGCGACACT
TCAAAAACACATCGAAACCCATTGTGAGgatgatttgaaagaaattttga
aaggagCTCTTCATGTTGATAATCTCAATAGTGGtgcaaaaacaatcaaa
caagcTGAATCTCTTTACCTCACCGCGAAGGAGTGTCTTGAGAAGGGAGG
AtttaatttaagaaaatttcgtTCAAACAGTGATGAACTTGAGAGAAAGA
TTTTTGAACGTTTCCCTGGCGACAAACGATATAACGGGGAAGAGAAAATT
TTAGGGATTAAATGGGATAAAAATTCCGACAAGATTATTTTTAACTTTGC
TGAAATGAGATCAAAGTTTACACAAAATGCAACTCGAAGGTCGCTTTTAG
CTTCGATTGCTTCTATTTATGATCTCTTGGGACTGATAAGCACAATTACA
gtcaaaatgataattttgcATCAGAAAGTTTGTTATGCAAAATGCAAGTG
GGATGAACTGTTACCCCCTGACCTCATGAAAGAGTGGAAGTCCATTTTGA
ATGAATTTAAGGAGATAGACTCCATTGAAATTGATCGAAATTATTGCTTC
GACGACCCCAACGACCCTATTACGAATGTACAGATCCACAGCTTCAGTGA
CGCCTCCGAAAATATGATTGCTGCTACGATTTATGGCCGGTTTAACCTTT
CCGCcccgaaagacgtatctgatacgttcgccatacgttccgaaaggcgt
atctgatacgttcgccatacgttccgaaagacgtatctgatacgttTTTA
AGGTGACCTTTATATTTGGTCGGATAACGCCCCAACCGTCAGAGGTACGG
CAAAACCGATTAAAAAATCGGAATCAGCGTGAAATTTCCGATAAGAAACA
ATCGAGGTTTGTTTTGGTATGacgcaacatttttcaaaaatagaaatggt
AGACCAAGCTATGTTGCGTGATTTTGTGAAACTGGAGGAGGCAGAAAGTT
AGCTATGAAAN Coding sequence (CDS) from alignment at sc0002255:2..1062 >TCONS_00039955 ID=TCONS_00039955|Name=TCONS_00039955|organism=Clytia hemisphaerica|type=CDS|length=804bp|location=Sequence derived from alignment at sc0002255:2..1062 (Clytia hemisphaerica)
GACTTCGAAAACTTTGAGAACAATGAACTTATTGAATTACGATTTACACG
TGTTATTTTTGGTTTGAATTCCTCGCCCTTTTTATTGCCAGCGACACTTC
AAAAACACATCGAAACCCATTGTGAGgatgatttgaaagaaattttgaaa
ggagCTCTTCATGTTGATAATCTCAATAGTGGtgcaaaaacaatcaaaca
agcTGAATCTCTTTACCTCACCGCGAAGGAGTGTCTTGAGAAGGGAGGAt
ttaatttaagaaaatttcgtTCAAACAGTGATGAACTTGAGAGAAAGATT
TTTGAACGTTTCCCTGGCGACAAACGATATAACGGGGAAGAGAAAATTTT
AGGGATTAAATGGGATAAAAATTCCGACAAGATTATTTTTAACTTTGCTG
AAATGAGATCAAAGTTTACACAAAATGCAACTCGAAGGTCGCTTTTAGCT
TCGATTGCTTCTATTTATGATCTCTTGGGACTGATAAGCACAATTACAgt
caaaatgataattttgcATCAGAAAGTTTGTTATGCAAAATGCAAGTGGG
ATGAACTGTTACCCCCTGACCTCATGAAAGAGTGGAAGTCCATTTTGAAT
GAATTTAAGGAGATAGACTCCATTGAAATTGATCGAAATTATTGCTTCGA
CGACCCCAACGACCCTATTACGAATGTACAGATCCACAGCTTCAGTGACG
CCTCCGAAAATATGATTGCTGCTACGATTTATGGCCGGTTTAACCTTTCC
GCcccgaaagacgtatctgatacgttcgccatacgttccgaaaggcgtat
ctga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00039955-exon-sc0002255-1491911889:2..1062 | TCONS_00039955-exon-sc0002255-1491911889:2..1062 | Clytia hemisphaerica | exon |
| TCONS_00039955-exon-sc0002255-1510915933:2..1062 | TCONS_00039955-exon-sc0002255-1510915933:2..1062 | Clytia hemisphaerica | exon |
| TCONS_00039955-exon-sc0002255-1575043694:2..1062 | TCONS_00039955-exon-sc0002255-1575043694:2..1062 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002255 | supercontig | sc0002255:2..1062 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR008042 | Retrotrans_Pao |
Blast
The following BLAST results are available for this feature:
|
