TCONS_00039950 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039950
Unique NameTCONS_00039950
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length576

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039950 ID=TCONS_00039950|Name=TCONS_00039950|organism=Clytia hemisphaerica|type=transcript|length=576bp
CATCAGCAAGGAAATTGAGACAAGTGTTGACTCTTTACAAGGATTTTGGT
GAACTTGCAAGGGACGTACGCAGCACCACCGGAGATGTTGAAAGAATAAA
ATCTTTTACAGCCCGTGCCGagagatatttcaaaaagtttacatCAAATG
CTTCTAACTCTATGCTACAAAGGCTACCTTATCTTCATTTGTTACGAATG
CATATTGGAAAAATTATGGTAAAGCACTATGAACTGTTTGGTTGGTGTTA
TGGAGTTTAATGATGTAATGCTGGTGAACACCTAAACAAGGTCATTAAGA
CAGTTGAAATCACAGGAACAAATTTTgatgcaaaaagatttttcgcaATT
GTTCACTTTTTGCGATCTAAACAGTTAATTTTCACAAGCTCCatcatttc
aaatgaaaaaagtgTGAAATGCTCGAAATGCAGTCAATATGGTCAcaata
aaaagaacaaaatttgtCCGTTGCATCCAATTCACCCCAAAGATATTCCT
GAAGATTCGGACCCAGAAGAAAATGATTAGTTTATAATTAGTTTTTATTA
TTAGCCTTTTGAGTAGCTTATTTGTg
Run BLAST on NCBI

transcript from alignment at sc0002253:17543..18238+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039950 ID=TCONS_00039950|Name=TCONS_00039950|organism=Clytia hemisphaerica|type=transcript|length=696bp|location=Sequence derived from alignment at sc0002253:17543..18238+ (Clytia hemisphaerica)
CATCAGCAAGGAAATTGAGACAAGTGTTGACTCTTTACAAGGATTTTGGT
GAACTTGCAAGGTATTTAATCTCTCTTAAAATAAGGTACATGACTTGTAA
TATTGAATTGATGGGAAATGTTTGACAAGTGAATCATAGACTCTTTCAAA
ACAATAtactttttttaatctttctaTTCAGGGACGTACGCAGCACCACC
GGAGATGTTGAAAGAATAAAATCTTTTACAGCCCGTGCCGagagatattt
caaaaagtttacatCAAATGCTTCTAACTCTATGCTACAAAGGCTACCTT
ATCTTCATTTGTTACGAATGCATATTGGAAAAATTATGGTAAAGCACTAT
GAACTGTTTGGTTGGTGTTATGGAGTTTAATGATGTAATGCTGGTGAACA
CCTAAACAAGGTCATTAAGACAGTTGAAATCACAGGAACAAATTTTgatg
caaaaagatttttcgcaATTGTTCACTTTTTGCGATCTAAACAGTTAATT
TTCACAAGCTCCatcatttcaaatgaaaaaagtgTGAAATGCTCGAAATG
CAGTCAATATGGTCAcaataaaaagaacaaaatttgtCCGTTGCATCCAA
TTCACCCCAAAGATATTCCTGAAGATTCGGACCCAGAAGAAAATGATTAG
TTTATAATTAGTTTTTATTATTAGCCTTTTGAGTAGCTTATTTGTg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024191XLOC_024191Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039950-exon-sc0002253-1491911889:17543..17603TCONS_00039950-exon-sc0002253-1491911889:17543..17603Clytia hemisphaericaexon
TCONS_00039950-exon-sc0002253-1510915933:17543..17603TCONS_00039950-exon-sc0002253-1510915933:17543..17603Clytia hemisphaericaexon
TCONS_00039950-exon-sc0002253-1575043694:17543..17603TCONS_00039950-exon-sc0002253-1575043694:17543..17603Clytia hemisphaericaexon
TCONS_00039950-exon-sc0002253-1491911889:17724..18238TCONS_00039950-exon-sc0002253-1491911889:17724..18238Clytia hemisphaericaexon
TCONS_00039950-exon-sc0002253-1510915933:17724..18238TCONS_00039950-exon-sc0002253-1510915933:17724..18238Clytia hemisphaericaexon
TCONS_00039950-exon-sc0002253-1575043694:17724..18238TCONS_00039950-exon-sc0002253-1575043694:17724..18238Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002253supercontigsc0002253:17543..18238 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.422589	1.61476	0	0.35961	0	0	0.139545	0	0.0961599	0.2096	0	0.119478	0.15037	0.133536	0.164677	0.0727227	0	0.163248	0	0	0.117072	0	0.198672	0	0	0	0.312508	0	0	0.331486
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039950 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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