TCONS_00039949 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039949
Unique NameTCONS_00039949
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length811

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039949 ID=TCONS_00039949|Name=TCONS_00039949|organism=Clytia hemisphaerica|type=transcript|length=811bp
CAAGCCATCGTTAGGGCAAAAGCCACCCCGTGACGAATCTTCAACAACCC
AGTCTTCAACAACCCAGTCTTCAACAGCCCAGTCTTCAACAACCCAGTCT
TCAACAACCCAGTCTTCAACACTCCAGTCTTCAACGGTGCCTCTAGAGGA
AGCCTTGGAAGTTCTTGAAGAAGGAAATGTTTAATATTTAAAAGTactcg
attgtggtttcaaaacttcccggtgaatttcccttttttctcaaatatta
tgaccttgattgtagctgGGGACCTTgagttttgtataagattcccatta
cTGCACTAAGTAACTTTCCGAAGCTCAATTTTAACTATCctaagtcctgg
tctttttccgctagaaaagtggcaaaggaattttagtgcggaaatgggat
aCTAAACTTTAATACTTGAGCTATTCCCTTCCTACTCACCTGTCTTAAAC
AGATATAAATCAGTGccaaatcaattttcaatttatcaAGCATTCGTCAG
TCCTTCATTCtcctttgtttacatttttagcGATTCTCTATTTAGCTCTA
GTTCGCATTCCGTTTAGCCTGATTCATTTGGGCGATTcctttttttcagc
ttttttctgTCCTCTACAAGGGAGATTCTGGGGAGAAGCTATCCTCACCT
GCGGACAGGCCCCGTAACAGATGAGTGTTGTTTCCCCCTAGGGACCGCTT
TTGTCCCTGTGATCTATACTGGTCACTCCACTTGTACATATTCGAAAAAC
GAAAACTTAGATATATTAGGgctctttattatttttttaaatgtaaatac
tACTTAGAGAC
Run BLAST on NCBI

transcript from alignment at sc0002251:5230..6040

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039949 ID=TCONS_00039949|Name=TCONS_00039949|organism=Clytia hemisphaerica|type=transcript|length=811bp|location=Sequence derived from alignment at sc0002251:5230..6040 (Clytia hemisphaerica)
GTCTCTAAGTagtatttacatttaaaaaaataataaagagcCCTAATATA
TCTAAGTTTTCGTTTTTCGAATATGTACAAGTGGAGTGACCAGTATAGAT
CACAGGGACAAAAGCGGTCCCTAGGGGGAAACAACACTCATCTGTTACGG
GGCCTGTCCGCAGGTGAGGATAGCTTCTCCCCAGAATCTCCCTTGTAGAG
GAcagaaaaaagctgaaaaaaaggAATCGCCCAAATGAATCAGGCTAAAC
GGAATGCGAACTAGAGCTAAATAGAGAATCgctaaaaatgtaaacaaagg
aGAATGAAGGACTGACGAATGCTtgataaattgaaaattgatttggCACT
GATTTATATCTGTTTAAGACAGGTGAGTAGGAAGGGAATAGCTCAAGTAT
TAAAGTTTAGtatcccatttccgcactaaaattcctttgccacttttcta
gcggaaaaagaccaggacttagGATAGTTAAAATTGAGCTTCGGAAAGTT
ACTTAGTGCAgtaatgggaatcttatacaaaactcAAGGTCCCcagctac
aatcaaggtcataatatttgagaaaaaagggaaattcaccgggaagtttt
gaaaccacaatcgagtACTTTTAAATATTAAACATTTCCTTCTTCAAGAA
CTTCCAAGGCTTCCTCTAGAGGCACCGTTGAAGACTGGAGTGTTGAAGAC
TGGGTTGTTGAAGACTGGGTTGTTGAAGACTGGGCTGTTGAAGACTGGGT
TGTTGAAGACTGGGTTGTTGAAGATTCGTCACGGGGTGGCTTTTGCCCTA
ACGATGGCTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024190XLOC_024190Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039949-exon-sc0002251-1491911889:5230..6040TCONS_00039949-exon-sc0002251-1491911889:5230..6040Clytia hemisphaericaexon
TCONS_00039949-exon-sc0002251-1510915933:5230..6040TCONS_00039949-exon-sc0002251-1510915933:5230..6040Clytia hemisphaericaexon
TCONS_00039949-exon-sc0002251-1575043694:5230..6040TCONS_00039949-exon-sc0002251-1575043694:5230..6040Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002251supercontigsc0002251:5230..6040 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0677423	0.116356	0.116764	0.0906241	8.68324	8.98397	7.98124	12.5204	5.19164	5.1359	3.51687	3.66638	2.82694	4.03757	0.03965	0.310851	0.1337	0.308516	0	0	0.0800407	0	0.135545	0.201542	2.59463	4.63905	0.210721	0	0.0740763	0.124571
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039949 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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