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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00039938 ID=TCONS_00039938|Name=TCONS_00039938|organism=Clytia hemisphaerica|type=transcript|length=6177bpRun BLAST on NCBI protein sequence of TCONS_00039938-protein >TCONS_00039938-protein ID=TCONS_00039938-protein|Name=TCONS_00039938-protein|organism=Clytia hemisphaerica|type=polypeptide|length=502bp MLFPLDLGLFNIRNKFLVALDILQDWWESLKLGTPLTNIITAKMHALLKKRun BLAST on NCBI transcript from alignment at sc0002248:9428..28577+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00039938 ID=TCONS_00039938|Name=TCONS_00039938|organism=Clytia hemisphaerica|type=transcript|length=19150bp|location=Sequence derived from alignment at sc0002248:9428..28577+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0002248:9428..28577+ >TCONS_00039938 ID=TCONS_00039938|Name=TCONS_00039938|organism=Clytia hemisphaerica|type=CDS|length=12072bp|location=Sequence derived from alignment at sc0002248:9428..28577+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00039938 vs. Swiss-Prot (Human)
Match: HMGX3 (HMG domain-containing protein 3 OS=Homo sapiens GN=HMGXB3 PE=2 SV=2) HSP 1 Score: 166.392 bits (420), Expect = 6.205e-41 Identity = 139/503 (27.63%), Postives = 227/503 (45.13%), Query Frame = 3
Query: 2757 GLFNIRNKFLVALDILQDWWESLKLGT-PLTNIITAKMHALLKKVPNERRPEVS--KFKYHLEILYDGYYGFECMTLRSLDDVICGYCGIAGKIYFGDGNEKNCCGLKGIXXXXXXXXXXXXXXXXALSSNNIQSMTTMLDEVKLHLVERSTFAKHRQEFRINYKDIPPLIAP-SNARAELNTEGYKKSGYLENPQNKVKGDAIMLEKLFKDGKIQSIDDVESMSLDSLRQLCKQCMIPTSLK-SMAMLRLDLRTLYATILVGSSNCHQFVKAEGH-TGGFYHIVCRHGTTVASKFMVLTESVRDAADLWLSLKYPPVLFVCDTPCTFTRHINQRSPDEAIAYWGENDGCFEVPTLGKDPEPNKSVPDIVPGEHSDSNTVAHLYLDQKVHPVTGKTQRYVCGDRFHAKKNPHKS-PLCAYHNIDLCQQAKTVKTSYQESQNNQKNEKRNRSSCSQNFLHHIMYNYLMNFYDNERVVLKQLNDIKERTGQKEVV-RDEFGRFQV 4241
GLFN+ NK LV+LD+L +KLG P +I + +LK V + ++ + E+L +GY+ FEC+T+R +D+ICG CG+A K+ +E+N LK ++ + L SN + ++ ++ ++E+ F + + I P P +NTE K V G L +L ++G + +D++ S S + L+ L +QC IP + S L L LY ++ N + ++ H TGG + VC H SK++V ES RD DL S ++ P ++V D + + P+ WG N GCF PT +P + S P+++ ++ T + HPVT R + HA P+ P +H++ LC + T +++ N R R N H+ +YN LM+F + +V +Q++DI + EVV RD R V
Sbjct: 1051 GLFNVGNKLLVSLDLLFAIRNQIKLGEDPRVSI-----NVVLKSVQEQTEKTLTSEELSQLQELLCNGYWAFECLTVRDYNDMICGICGVAPKVEMAQRSEENVLALKSVEFTWPEF----------LGSNEV-NVEDFWATMETEVIEQVAFPASIPITKFDASVIAPFFPPLMRGAVVVNTEKDKNLDV-----QPVPGSGSALVRLLQEGTCK-LDEIGSYSEEKLQHLLRQCGIPFGAEDSKDQLCFSLLALYESV----QNGARAIRPPRHFTGGKIYKVCPHQVVCGSKYLVRGESARDHVDLLASSRHWPPVYVVDMATSVALCADLCYPELTNQMWGRNQGCFSSPT---EPPVSVSCPELLDQHYTVDMTETEHSIQ---HPVTKTATRRI----VHAGLQPNPGDPSAGHHSLALCPELAPYATILASIVDSKPNGVRQRPIAFDNATHYYLYNRLMDFLTSREIVNRQIHDIVQSCQPGEVVIRDTLYRLGV 1517 The following BLAST results are available for this feature:
BLAST of TCONS_00039938 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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