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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00039929 ID=TCONS_00039929|Name=TCONS_00039929|organism=Clytia hemisphaerica|type=transcript|length=1764bp
GCATGTGGCTTAGACAACATACCCGCTGAAATCTGGAAGCTAAGAAACTT
CAATGATATTCTGTTATCACTTTGTAACTCTGTCTATCAAGGCCAGCCAA
TTGACAAATGGAGAGAAGGATGCATTCCtccttttcccaaaaaaggagaC
CTTTGGTGTTGCGTTCAACTATCGAGGAATCACCCTCACATCAATGGCAG
TTAAAATTTACAATACCATGCTACTGAATAGGCTTCGACCACACATTGAT
CCATTATTGTGAAAAAACCAAAATGGCTTCCGAAAAAACAGATCAACAGA
TCGTAGATCAATCGAAGGAGCAAAAGAAAAGAATCTCCCACTTGTCCTTC
TATTTATCGATTTTTCTAAAGCATTCGATTCTATAAATAGAACCAAAATG
AAACAGATCTTACTATCATATGGCACAGCTTAAGAAACAGTTTCAGCAAT
AATGATGCTCTATGAGAATACAGAATCCATGGTCAGATCCCCAGACGGTG
ACACTGATTTCTTTAATATAACCAAAGGAGTATTGCAAGGTGACACGCTT
GCACCATACCTCTTTGTAATTTGCCTTGATTATATAATGAGGAAAGCAAC
CGAAGATAATACGAATCTTGGCTTTACTCTAAAACAACAGACAAGCCGTA
GACATCCCCCCGATATGATTACTGATGCTGATTATGCGGACGATCTATGC
ATCACCTCTGACCTTCTCAATGATGCAACTGTCCTCCTACATCGTATTGA
AGAAGCGTCCATCAAAATAGGTCTCTGTCTCAATGCAAAAAAGACATAGT
TCATGGTTTTCAACCAAGCGCATTCAGGTTCAATAAAATCCCGAACAAAC
CAAAACATCCAAGCTGTTTAAGAATTTACCTACCTTGGCAGTAACATTTC
CTAACAAGTAACAAGTCAGACTAGCAAAAGCCTGGTCAGCCCTCAACAAA
CTGGACAAAATATGGAAATCTAAACTatcagcaaaattaaaaaggaaTTT
CTTCAGAGCTACAGTCGAGTCAGTTCTTCTATATAGAGCTACCTCGTGGA
CCCTAACTAAAACCCTCGAGAAAATGCTGGATGGCACGTACACAAGAATG
CTTCGGCCAGTTCTGAATATTTCATGAAGAGAACATCCGACCAAGAGATT
ACTCCACGGAGATCTTCCACCAATAAGTCAAACATTGAAGGACAGGCGTC
TCAGGTTTGCTGGACATTGTTTTAGGAGCAAAGATGAGCTGGCTAGCGAG
CTTGTCCTTTGGCAACCAAATCACGGTTTCAAAACACGCGGTAAACCAGC
AACTGTGAAGACCTTGGCTGCTTGAAAGAAGACCTCCCGGTGCTCATGAG
AGATCGAACACGGTGGAAAGATCAAGTCATGCCGAGCTCGCTCGACccca
atgcaaaaaaaaaatgccAGGCGCTGGGGAAACTTTCGTATGCAAATCAC
TGCGTACAGTTGAAACCTTTTGATTCGTGTTATGTATGGTCTTAagtttc
taaaaagttttttggtaGCACCAACCCCGGGAACGCCCTTTTGGGCGTAA
AAAATTGTTCCTTTGGTGGTTTCGCAAAAAGTGAAACCAATCGACGCGAA
ATTTTATACTGATTTAAAAAAGGTTAACGTTATGGGCAAAAAAATCAAGT
CCTCAAAAGTTATTAACGTTTGAATGTGGAAGGGTAATTTATATAGCATT
ATCTActcgtacacgctttttttttataagaaaggtgtgttttcatttca
tcatggatattttt Run BLAST on NCBI protein sequence of TCONS_00039929-protein >TCONS_00039929-protein ID=TCONS_00039929-protein|Name=TCONS_00039929-protein|organism=Clytia hemisphaerica|type=polypeptide|length=115bp
MMLYENTESMVRSPDGDTDFFNITKGVLQGDTLAPYLFVICLDYIMRKAT
EDNTNLGFTLKQQTSRRHPPDMITDADYADDLCITSDLLNDATVLLHRIE
EASIKIGLCLNAKKT Run BLAST on NCBI transcript from alignment at sc0002246:19972..21735 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00039929 ID=TCONS_00039929|Name=TCONS_00039929|organism=Clytia hemisphaerica|type=transcript|length=1764bp|location=Sequence derived from alignment at sc0002246:19972..21735 (Clytia hemisphaerica)
aaaaatatccatgatgaaatgaaaacacacctttcttataaaaaaaaagc
gtgtacgagTAGATAATGCTATATAAATTACCCTTCCACATTCAAACGTT
AATAACTTTTGAGGACTTGATTTTTTTGCCCATAACGTTAACCTTTTTTA
AATCAGTATAAAATTTCGCGTCGATTGGTTTCACTTTTTGCGAAACCACC
AAAGGAACAATTTTTTACGCCCAAAAGGGCGTTCCCGGGGTTGGTGCtac
caaaaaactttttagaaactTAAGACCATACATAACACGAATCAAAAGGT
TTCAACTGTACGCAGTGATTTGCATACGAAAGTTTCCCCAGCGCCTggca
ttttttttttgcattgggGTCGAGCGAGCTCGGCATGACTTGATCTTTCC
ACCGTGTTCGATCTCTCATGAGCACCGGGAGGTCTTCTTTCAAGCAGCCA
AGGTCTTCACAGTTGCTGGTTTACCGCGTGTTTTGAAACCGTGATTTGGT
TGCCAAAGGACAAGCTCGCTAGCCAGCTCATCTTTGCTCCTAAAACAATG
TCCAGCAAACCTGAGACGCCTGTCCTTCAATGTTTGACTTATTGGTGGAA
GATCTCCGTGGAGTAATCTCTTGGTCGGATGTTCTCTTCATGAAATATTC
AGAACTGGCCGAAGCATTCTTGTGTACGTGCCATCCAGCATTTTCTCGAG
GGTTTTAGTTAGGGTCCACGAGGTAGCTCTATATAGAAGAACTGACTCGA
CTGTAGCTCTGAAGAAAttcctttttaattttgctgatAGTTTAGATTTC
CATATTTTGTCCAGTTTGTTGAGGGCTGACCAGGCTTTTGCTAGTCTGAC
TTGTTACTTGTTAGGAAATGTTACTGCCAAGGTAGGTAAATTCTTAAACA
GCTTGGATGTTTTGGTTTGTTCGGGATTTTATTGAACCTGAATGCGCTTG
GTTGAAAACCATGAACTATGTCTTTTTTGCATTGAGACAGAGACCTATTT
TGATGGACGCTTCTTCAATACGATGTAGGAGGACAGTTGCATCATTGAGA
AGGTCAGAGGTGATGCATAGATCGTCCGCATAATCAGCATCAGTAATCAT
ATCGGGGGGATGTCTACGGCTTGTCTGTTGTTTTAGAGTAAAGCCAAGAT
TCGTATTATCTTCGGTTGCTTTCCTCATTATATAATCAAGGCAAATTACA
AAGAGGTATGGTGCAAGCGTGTCACCTTGCAATACTCCTTTGGTTATATT
AAAGAAATCAGTGTCACCGTCTGGGGATCTGACCATGGATTCTGTATTCT
CATAGAGCATCATTATTGCTGAAACTGTTTCTTAAGCTGTGCCATATGAT
AGTAAGATCTGTTTCATTTTGGTTCTATTTATAGAATCGAATGCTTTAGA
AAAATCGATAAATAGAAGGACAAGTGGGAGATTCTTTTCTTTTGCTCCTT
CGATTGATCTACGATCTGTTGATCTGTTTTTTCGGAAGCCATTTTGGTTT
TTTCACAATAATGGATCAATGTGTGGTCGAAGCCTATTCAGTAGCATGGT
ATTGTAAATTTTAACTGCCATTGATGTGAGGGTGATTCCTCGATAGTTGA
ACGCAACACCAAAGGtctccttttttgggaaaaggaGGAATGCATCCTTC
TCTCCATTTGTCAATTGGCTGGCCTTGATAGACAGAGTTACAAAGTGATA
ACAGAATATCATTGAAGTTTCTTAGCTTCCAGATTTCAGCGGGTATGTTG
TCTAAGCCACATGC Coding sequence (CDS) from alignment at sc0002246:19972..21735 >TCONS_00039929 ID=TCONS_00039929|Name=TCONS_00039929|organism=Clytia hemisphaerica|type=CDS|length=348bp|location=Sequence derived from alignment at sc0002246:19972..21735 (Clytia hemisphaerica)
CTATGTCTTTTTTGCATTGAGACAGAGACCTATTTTGATGGACGCTTCTT
CAATACGATGTAGGAGGACAGTTGCATCATTGAGAAGGTCAGAGGTGATG
CATAGATCGTCCGCATAATCAGCATCAGTAATCATATCGGGGGGATGTCT
ACGGCTTGTCTGTTGTTTTAGAGTAAAGCCAAGATTCGTATTATCTTCGG
TTGCTTTCCTCATTATATAATCAAGGCAAATTACAAAGAGGTATGGTGCA
AGCGTGTCACCTTGCAATACTCCTTTGGTTATATTAAAGAAATCAGTGTC
ACCGTCTGGGGATCTGACCATGGATTCTGTATTCTCATAGAGCATCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00039929-exon-sc0002246-1491911889:19972..21735 | TCONS_00039929-exon-sc0002246-1491911889:19972..21735 | Clytia hemisphaerica | exon |
| TCONS_00039929-exon-sc0002246-1510915933:19972..21735 | TCONS_00039929-exon-sc0002246-1510915933:19972..21735 | Clytia hemisphaerica | exon |
| TCONS_00039929-exon-sc0002246-1575043694:19972..21735 | TCONS_00039929-exon-sc0002246-1575043694:19972..21735 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002246 | supercontig | sc0002246:19972..21735 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000477 | RT_dom |
Blast
The following BLAST results are available for this feature:
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