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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00039925 ID=TCONS_00039925|Name=TCONS_00039925|organism=Clytia hemisphaerica|type=transcript|length=2540bp
GGCTTTTTAAATCATTTCCAGCCCCTGGACTTTTGCAATTACGTAATATG
AAATCTCCCCTAAAAACACCCTTTGCCCTCATTCTTTCAGCGATTCACTG
TATGACAAACCTTTTGAAGCTCGATTTATTTTTGAGTAGAAAGTTTCTTC
AGGAAGTGGAATGTTTGTTTTAACCTGTTTAACCTGTCAAtattgatttt
atattttcgataagataaacttttctttttaaagataCGAACACTGACAA
AAATACTTGAACAAGGGTATCTCAACCGTTCCttcaaagaagaagatcaa
gATGTTGTCATTGCTGAGTACCTTCTCCCTGAtgtACTGACATACATCAT
CGAAATCGTCATCAATGAAAAAGGCATCAACGAGTTATCGATTGAGAGAG
CTTGTTGTTCATTATATACTGAGAAAAATAATCAATAATAATAATCGACC
ATCTCCGTTGCATCGGACTGAATCGGATAATTTTTGTTACTGTATCCACC
CTTTCTATTGAGAAACATGTTTGCCATACTGACCACCTTGccgaattcaa
aattttaatgtcaCAAGATCAGTTTTGTAGCAAAATTCTACACCGCTCCG
CCGCCATTTTGATTTCCGTTACCTGATACTTCGTTAGCTGTTTTTTCTGT
CGGCATTTGTGGAGTttacacacgtttttttaacCAATTAAATTGCCGAT
CGGCATTATTTTGCTCTAGCATTGGAAGgtaatcaatttttcaaaaatct
tttccacAAACAGTTTTTAAATCGGCATTTATGTTTCGACAGAATGCCCA
AAATGCTGTTTGTCAAACGAATGAAGTAGAAGTGGTGTTCCTGGCAAAAC
TGGCTTTGCTATTTGTCAATCGAAAGGGCTGTATAATTATCAagagtttt
ttagaaaaacgaGAGTTCTGTAGATatcattttcatgaaatttcatttct
atttaTATGCCAGTATATCTTTTTCTAAAGAATCTGTAAAATTtctcaat
aaaataaaaatgaaagcgCTCTTAGTAAAGAATaactttaatttcatttt
cgtttttgtAAATCCCgtcctttttttcaaaattgtcatgAGATTACCCA
ATCCGcctaaaatttccaataaatgGGTGACTTTGGTTCGGATTCCGAGC
CTTTTTACCCAAATCGCCATTAGATTACCCATCCGCCTAAGATTTTCAAT
AAATGGGTGACTTTGGTTCGAATTCCGAGCCATTTTGCCCAAATCACCAT
TAAATTACCCATACgcctaaaattttcaataaatgggtGACTTTGGTTCG
GATTCCGAGCCATTTTGCCCAAATCACCATTAAATTATCCATCCGCCTAA
GATTTTCAATAAATGGGTGACTTTGGTTCGAATTCCGAGCCATTTTGCCC
AAATCACCATTAAATTACCCATACgcctaaaattttcaataaatgggtGA
CTTTGGTTCGGATTCCGAGCCATTTTGCCCAAATCACCATTAAATTATCC
ATCCGCCTAAGATTTTCAATAAATGGGTGACTTTGGTTCGAATTCCGAGC
CATTTTGCCCAAATCACCATTAAATTACCCATACgcctaaaattttcaat
aaatgggtGACTTTGGTTCGGATTCCGAGCCATTTTGCCCAAATCACCAT
TAAATTACCCATACgcctaaaattttcaataaatgggtGACTTTGGTTCG
GATTCCGAGCCATTTTGCCCAAATCACCATTAAATTACCCATACgcctaa
aattttcaataaatgggtGACTTTGGTTCGGGTTCCGAGCTATTTTATTA
CCCAAATTGTTTCCTAATTTAAGAACGCTGACGTGAAACATTGCACGATT
ATATACAACATTCTCCTTAAACTTGCTAAAAATGAAGTCTAAGTCTAAGG
GGGAAATCTAGCAGGATTTTGGCAATATTCAACCCCCTGAACGTTTCCCA
AGCTCTAAGAACGCTGACgtgataaaatttctatgattggtcttcagagg
ttaatatacaacctcgtccccgtgtattgcaggctttatttacgttactg
attgacgccagagaatacccacctcgttccctgcgtattatctaGTGCTa
acagtaagcataaaaaactgataatacgcagggaacgaggttggttaata
tattctttgaaagcttaacctctgatactcagggtaccagGAACACTGAC
GTGAAATATTAGATATGATATTCCTGATTAGACTTGTTAAAACATAGTCT
GTATAAAAACCCCGGTCTTGAAGCGTTTTGTTTCTTTCTACTGTTACCTA
CTTGAACTTTCGTTGATAAATATAAATTAgttttttgctcactttttgat
catgtgattaacttTTGAACCAGTCCAAAGAGGAATATTTGGTAACGTAA
ttaaaaactgagcaaatccaCTTTTATAATCCACGACCTTACTTCAACAA
GGTTCTATCAAGGTGTCTTTTTGCTTATGTTTTACGGCAATTTCCTCACA
TCGACAAGGTTCTATGTGGTTAGATAGAACCTTGTTGTCG Run BLAST on NCBI transcript from alignment at sc0002244:15265..18610- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00039925 ID=TCONS_00039925|Name=TCONS_00039925|organism=Clytia hemisphaerica|type=transcript|length=3346bp|location=Sequence derived from alignment at sc0002244:15265..18610- (Clytia hemisphaerica)
GGCTTTTTAAATCATTTCCAGCCCCTGGACTTTTGCAATTACGTAATATG
AAATCTCCCCTAAAAACACCCTTTGCCCTCATTCTTTCAGCGATTCACTG
TATGACAAACCTTTTGAAGCTCGATTTATTTTTGAGTAGAAAGTTTCTTC
AGGAAGTGGAATGTTTGTTTTAACCTGTTTAACCTGTCAATATTGATTTT
ATATTTTCGATAAGATAAACTTTTCTTTTTAAAGATACGAACACTGACAA
AAATACTTGAACAAGGGTATCTCAACCGTTCCTTCAAAGAAGAAGATCAA
GATGTTGTCATTGCTGAGTACCTTCTCCCTGATGTAAGTACACGTTTTTT
TTTTTTAAGAAACTAGTTTTACCAAGCAGCCTCAATGTTTCTTAAGAAAT
CGGTCTTTTGAGCCTTAAATGTTTCTTAGATGTTTCTAAACNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCATTCT
CAGCCTCAGCATGTTTCTTAGATGTTTCTTAGTTTTTAGGCATTCTGAGC
CTCATGTTTCTTAAAAGTGTGTTTCTTAAAAAAAAAAAAACGTGTATAGT
ATTTTGCTATTTTTATTTACTATAAAGACCTACTGGGTCATTATTTCATT
CATATTATGTCACGTCACACTAGTTTTGGACTGGATATGCAGAGTAGGTA
CCTAGGAGCGCCGCAACCCATGCACCATTTGATAACACCCATAGAGGCGG
TTCAGTCGATCATAAACTCCAATTCTGGTTGACGTTTCCAAATAATTGCC
GTACTTAGGAAAATATAGAATACCAGCGGTACTTATAATCGGCTATTTGA
AATTGTCGTGGTTTGTGACCCTTACAGAACTTAGCCCTGTCAGTTTACAT
ACCGTTACCTTTTTTCTTAGTAACCTTCAGGCTTTTTTACATGCTGATTG
CGGTTCATTTTATTTATATCACTTTTTCTTTTTTTCAAGGTACTGACATA
CATCATCGAAATCGTCATCAATGAAAAAGGCATCAACGAGTTATCGATTG
AGAGAGCTTGTTGTTCATTATATACTGAGAAAAATAATCAATAATAATAA
TCGACCATCTCCGTTGCATCGGACTGAATCGGATAATTTTTGTTACTGTA
TCCACCCTTTCTATTGAGAAACATGTTTGCCATACTGACCACCTTGCCGA
ATTCAAAATTTTAATGTCACAAGATCAGTTTTGTAGCAAAATTCTACACC
GCTCCGCCGCCATTTTGATTTCCGTTACCTGATACTTCGTTAGCTGTTTT
TTCTGTCGGCATTTGTGGAGTTTACACACGTTTTTTTAACCAATTAAATT
GCCGATCGGCATTATTTTGCTCTAGCATTGGAAGGTAATCAATTTTTCAA
AAATCTTTTCCACAAACAGTTTTTAAATCGGCATTTATGTTTCGACAGAA
TGCCCAAAATGCTGTTTGTCAAACGAATGAAGTAGAAGTGGTGTTCCTGG
CAAAACTGGCTTTGCTATTTGTCAATCGAAAGGGCTGTATAATTATCAAG
AGTTTTTTAGAAAAACGAGAGTTCTGTAGATATCATTTTCATGAAATTTC
ATTTCTATTTATATGCCAGTATATCTTTTTCTAAAGAATCTGTAAAATTT
CTCAATAAAATAAAAATGAAAGCGCTCTTAGTAAAGAATAACTTTAATTT
CATTTTCGTTTTTGTAAATCCCGTCCTTTTTTTCAAAATTGTCATGAGAT
TACCCAATCCGCCTAAAATTTCCAATAAATGGGTGACTTTGGTTCGGATT
CCGAGCCTTTTTACCCAAATCGCCATTAGATTACCCATCCGCCTAAGATT
TTCAATAAATGGGTGACTTTGGTTCGAATTCCGAGCCATTTTGCCCAAAT
CACCATTAAATTACCCATACGCCTAAAATTTTCAATAAATGGGTGACTTT
GGTTCGGATTCCGAGCCATTTTGCCCAAATCACCATTAAATTATCCATCC
GCCTAAGATTTTCAATAAATGGGTGACTTTGGTTCGAATTCCGAGCCATT
TTGCCCAAATCACCATTAAATTACCCATACGCCTAAAATTTTCAATAAAT
GGGTGACTTTGGTTCGGATTCCGAGCCATTTTGCCCAAATCACCATTAAA
TTATCCATCCGCCTAAGATTTTCAATAAATGGGTGACTTTGGTTCGAATT
CCGAGCCATTTTGCCCAAATCACCATTAAATTACCCATACGCCTAAAATT
TTCAATAAATGGGTGACTTTGGTTCGGATTCCGAGCCATTTTGCCCAAAT
CACCATTAAATTACCCATACGCCTAAAATTTTCAATAAATGGGTGACTTT
GGTTCGGATTCCGAGCCATTTTGCCCAAATCACCATTAAATTACCCATAC
GCCTAAAATTTTCAATAAATGGGTGACTTTGGTTCGGGTTCCGAGCTATT
TTATTACCCAAATTGTTTCCTAATTTAAGAACGCTGACGTGAAACATTGC
ACGATTATATACAACATTCTCCTTAAACTTGCTAAAAATGAAGTCTAAGT
CTAAGGGGGAAATCTAGCAGGATTTTGGCAATATTCAACCCCCTGAACGT
TTCCCAAGCTCTAAGAACGCTGACGTGATAAAATTTCTATGATTGGTCTT
CAGAGGTTAATATACAACCTCGTCCCCGTGTATTGCAGGCTTTATTTACG
TTACTGATTGACGCCAGAGAATACCCACCTCGTTCCCTGCGTATTATCTA
GTGCTAACAGTAAGCATAAAAAACTGATAATACGCAGGGAACGAGGTTGG
TTAATATATTCTTTGAAAGCTTAACCTCTGATACTCAGGGTACCAGGAAC
ACTGACGTGAAATATTAGATATGATATTCCTGATTAGACTTGTTAAAACA
TAGTCTGTATAAAAACCCCGGTCTTGAAGCGTTTTGTTTCTTTCTACTGT
TACCTACTTGAACTTTCGTTGATAAATATAAATTAGTTTTTTGCTCACTT
TTTGATCATGTGATTAACTTTTGAACCAGTCCAAAGAGGAATATTTGGTA
ACGTAATTAAAAACTGAGCAAATCCACTTTTATAATCCACGACCTTACTT
CAACAAGGTTCTATCAAGGTGTCTTTTTGCTTATGTTTTACGGCAATTTC
CTCACATCGACAAGGTTCTATGTGGTTAGATAGAACCTTGTTGTCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00039925-exon-sc0002244-1575043694:18278..18610 | TCONS_00039925-exon-sc0002244-1575043694:18278..18610 | Clytia hemisphaerica | exon |
| TCONS_00039925-exon-sc0002244-1575043694:15265..17471 | TCONS_00039925-exon-sc0002244-1575043694:15265..17471 | Clytia hemisphaerica | exon |
| TCONS_00039925-exon-sc0002244-1510915933:18278..18610 | TCONS_00039925-exon-sc0002244-1510915933:18278..18610 | Clytia hemisphaerica | exon |
| TCONS_00039925-exon-sc0002244-1510915933:15265..17471 | TCONS_00039925-exon-sc0002244-1510915933:15265..17471 | Clytia hemisphaerica | exon |
| TCONS_00039925-exon-sc0002244-1491911889:18278..18610 | TCONS_00039925-exon-sc0002244-1491911889:18278..18610 | Clytia hemisphaerica | exon |
| TCONS_00039925-exon-sc0002244-1491911889:15265..17471 | TCONS_00039925-exon-sc0002244-1491911889:15265..17471 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002244 | supercontig | sc0002244:15265..18610 - |
Blast
The following BLAST results are available for this feature:
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