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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00039924 ID=TCONS_00039924|Name=TCONS_00039924|organism=Clytia hemisphaerica|type=transcript|length=1363bp
TTTTATAGGCaaataaaattataagaaataACATGGAAAATGTTGGAAAT
CGGAACAACAAAAGACTCATAATTGACTCTGAACGGTTAAAGTTGCTTCT
TTCCCAAAGATACACAATCGTCGAAATAGCCAAAAATGGTTTACTTGGAA
AAGTTGTACATCCCAATACTGTGCATAATGCTTGCAAAAGATTTGGCCTA
GACTCGGGAAGAAAATTGTACAGTCGATTGACACACGATCAGTTGAAAGA
AAAGATTACGgaaataaataaacaatttCCCAACTCAGGATCGGAAGAGG
TATTGAGTCACTTAAAGGGACAAGGAATTATATTACAACGAGACAAGTGT
AGAGAGTTGTTGCGCCAAGTTGACCCAGAAGGTGTTGCTATGAGATGGGC
TCAAACAATCAAAAGACGGCAGTATCGTGTTCCAACCCCAAACTCTCTAT
GGCATATTGACactcatcacaaattgattagATGGAATTTTGTCACACAT
GGATGCATTGATGGTTTTTCAAGACTTGTTTCGATGTTGAAAGTCTCTGC
CGATAATCTCGCAAGCACGGCACTGAACTTTTTTGTCGAAGGAATCAAAG
AATATGGTATTCCAAGTCGTTTGCGTCTAGATAAAGGATCAGAGTTTGTA
CACGTTCGATCTTTGATGGAGTACTTTAATGGTGAAGAAAGAGGAAGCCA
AATTTCAGGTCGTTCGGTTCATAACCAGAGGATCGAGCGCCTTTGGCGTG
ATGTTTATACGAAAGTAGTTGAAAAGTATTACAAGATTTTTTATCATATG
GAAGATCACGGGATCCTGGATTTGGAAAATCCGATTCATCTCTATGCGTT
ACAATACACATATTTACCAAGAATCCAGAGCGATTTAGACACGTGGAGAA
ATGCACACAATTGCCATCGCATTCGAACCGAGAACAACAAAACACCGATG
CAACTTTGGATTGCTGAGAGTATTCGTCATCAAGATTCGAATTCCACAGC
AATGACGAATCTCTTCGCTAGAGACGAAAATACTGCACTTGAAGAATTCT
TCATTGATAACCCCATGCACGAGCCAAATGATATAAAAGTTGTTTTGCCT
AGGATTGAAGCGCCTTTGACAGCTGCCCAACAGGCTCGACTGTCAGTTGA
TATCAATGTTTTAGCACCCTCTCATTCACATGGAATTGATTTATATGGAA
ATGTATTATTTTTCATTGAACGTGCTATTTCGGAGTAATTAGAATGATAA
AAGAGGTTTTTTCTTTATTCGGATTAATCgagatttttaaacattgtctT
TCTTGGCTCTCTTCGTATTATTGGCCAGGGCCGGCGAAACCGGCGAAAAC
CGGCGAAACTGAC Run BLAST on NCBI protein sequence of TCONS_00039924-protein >TCONS_00039924-protein ID=TCONS_00039924-protein|Name=TCONS_00039924-protein|organism=Clytia hemisphaerica|type=polypeptide|length=401bp
MENVGNRNNKRLIIDSERLKLLLSQRYTIVEIAKNGLLGKVVHPNTVHNA
CKRFGLDSGRKLYSRLTHDQLKEKITEINKQFPNSGSEEVLSHLKGQGII
LQRDKCRELLRQVDPEGVAMRWAQTIKRRQYRVPTPNSLWHIDTHHKLIR
WNFVTHGCIDGFSRLVSMLKVSADNLASTALNFFVEGIKEYGIPSRLRLD
KGSEFVHVRSLMEYFNGEERGSQISGRSVHNQRIERLWRDVYTKVVEKYY
KIFYHMEDHGILDLENPIHLYALQYTYLPRIQSDLDTWRNAHNCHRIRTE
NNKTPMQLWIAESIRHQDSNSTAMTNLFARDENTALEEFFIDNPMHEPND
IKVVLPRIEAPLTAAQQARLSVDINVLAPSHSHGIDLYGNVLFFIERAIS
E Run BLAST on NCBI transcript from alignment at sc0002244:8592..10307+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00039924 ID=TCONS_00039924|Name=TCONS_00039924|organism=Clytia hemisphaerica|type=transcript|length=1716bp|location=Sequence derived from alignment at sc0002244:8592..10307+ (Clytia hemisphaerica)
TTTTATAGGCaaataaaattataagaaataACATGGAAAATGTTGGAAAT
CGGAACAACAAAAGACTCATAATTGACTCTGAACGGTTAAAGTTGCTTCT
TTCCCAAAGATACACAATCGTCGAAATAGCCAAAAATGGTTTACTTGGAA
AAGTTGTACATCCCAATACTGTGCATAATGCTTGCAAAAGATTTGGCCTA
GACTCGGGAAGAAAATTGTACAGTCGATTGACACACGATCAGTTGAAAGA
AAAGATTACGgaaataaataaacaatttCCCAACTCAGGATCGGAAGAGG
TATTGAGTCACTTAAAGGGACAAGGAATTATATTACAACGAGACAAGTGT
AGAGAGTTGTTGCGCCAAGTTGACCCAGAAGGTGTTGCTATGAGATGGGC
TCAAACAATCAAAAGACGGCAGTATCGTGTTCCAACCCCAAACTCTCTAT
GGCATATTGACactcatcacaaattgattagGTACAGTTGACACACTCTT
TAATTAGATTTTCAAGTGGGAAATTTGCATCTATTAAAGTATTGAGTTAT
AGGGATAAGAGTCGTTTGAACATTTTCTACGTCGGAGCCATTCTCAACAC
AACAATATTCTTGACCTAGAATCTCAGAATTCCTATTCGTATGACTGTCT
GTTGGTTTGTGAGTGTTTGTATTTACATAAAACTTTGGGGTAGCCTAGAG
AGCCTAGAAATTTGACACGCTTGTTCCTTCCGCAAATGTCTGATTTccgc
tttttgaaattttaatttttgagggctggggacgagtttttgcGCCAGag
agaagctaaaattttcgaGAATTTCGATTTTTAGATGGAATTTTGTCACA
CATGGATGCATTGATGGTTTTTCAAGACTTGTTTCGATGTTGAAAGTCTC
TGCCGATAATCTCGCAAGCACGGCACTGAACTTTTTTGTCGAAGGAATCA
AAGAATATGGTATTCCAAGTCGTTTGCGTCTAGATAAAGGATCAGAGTTT
GTACACGTTCGATCTTTGATGGAGTACTTTAATGGTGAAGAAAGAGGAAG
CCAAATTTCAGGTCGTTCGGTTCATAACCAGAGGATCGAGCGCCTTTGGC
GTGATGTTTATACGAAAGTAGTTGAAAAGTATTACAAGATTTTTTATCAT
ATGGAAGATCACGGGATCCTGGATTTGGAAAATCCGATTCATCTCTATGC
GTTACAATACACATATTTACCAAGAATCCAGAGCGATTTAGACACGTGGA
GAAATGCACACAATTGCCATCGCATTCGAACCGAGAACAACAAAACACCG
ATGCAACTTTGGATTGCTGAGAGTATTCGTCATCAAGATTCGAATTCCAC
AGCAATGACGAATCTCTTCGCTAGAGACGAAAATACTGCACTTGAAGAAT
TCTTCATTGATAACCCCATGCACGAGCCAAATGATATAAAAGTTGTTTTG
CCTAGGATTGAAGCGCCTTTGACAGCTGCCCAACAGGCTCGACTGTCAGT
TGATATCAATGTTTTAGCACCCTCTCATTCACATGGAATTGATTTATATG
GAAATGTATTATTTTTCATTGAACGTGCTATTTCGGAGTAATTAGAATGA
TAAAAGAGGTTTTTTCTTTATTCGGATTAATCgagatttttaaacattgt
ctTTCTTGGCTCTCTTCGTATTATTGGCCAGGGCCGGCGAAACCGGCGAA
AACCGGCGAAACTGAC Coding sequence (CDS) from alignment at sc0002244:8592..10307+ >TCONS_00039924 ID=TCONS_00039924|Name=TCONS_00039924|organism=Clytia hemisphaerica|type=CDS|length=2412bp|location=Sequence derived from alignment at sc0002244:8592..10307+ (Clytia hemisphaerica)
ATGGAAAATGTTGGAAATCGGAACAACAAAAGACTCATAATTGACTCTGA
ACGGTTAAAGTTGCTTCTTTCCCAAAGATACACAATCGTCGAAATAGCCA
AAAATGGTTTACTTGGAAAAGTTGTACATCCCAATACTGTGCATAATGCT
TGCAAAAGATTTGGCCTAGACTCGGGAAGAAAATTGTACAGTCGATTGAC
ACACGATCAGTTGAAAGAAAAGATTACGgaaataaataaacaatttCCCA
ACTCAGGATCGGAAGAGGTATTGAGTCACTTAAAGGGACAAGGAATTATA
TTACAACGAGACAAGTGTAGAGAGTTGTTGCGCCAAGTTGACCCAGAAGG
TGTTGCTATGAGATGGGCTCAAACAATCAAAAGACGGCAGTATCGTGTTC
CAACCCCAAACTCTCTATGGCATATTGACactcatcacaaattgattagA
TGGAATTTTGTCACACATGGATGCATTGATGGTTTTTCAAGACTTGTTTC
GATGTTGAAAGTCTCTGCCGATAATCTCGCAAGCACGGCACTGAACTTTT
TTGTCGAAGGAATCAAAGAATATGGTATTCCAAGTCGTTTGCGTCTAGAT
AAAGGATCAGAGTTTGTACACGTTCGATCTTTGATGGAGTACTTTAATGG
TGAAGAAAGAGGAAGCCAAATTTCAGGTCGTTCGGTTCATAACCAGAGGA
TCGAGCGCCTTTGGCGTGATGTTTATACGAAAGTAGTTGAAAAGTATTAC
AAGATTTTTTATCATATGGAAGATCACGGGATCCTGGATTTGGAAAATCC
GATTCATCTCTATGCGTTACAATACACATATTTACCAAGAATCCAGAGCG
ATTTAGACACGTGGAGAAATGCACACAATTGCCATCGCATTCGAACCGAG
AACAACAAAACACCGATGCAACTTTGGATTGCTGAGAGTATTCGTCATCA
AGATTCGAATTCCACAGCAATGACGAATCTCTTCGCTAGAGACGAAAATA
CTGCACTTGAAGAATTCTTCATTGATAACCCCATGCACGAGCCAAATGAT
ATAAAAGTTGTTTTGCCTAGGATTGAAGCGCCTTTGACAGCTGCCCAACA
GGCTCGACTGTCAGTTGATATCAATGTTTTAGCACCCTCTCATTCACATG
GAATTGATTTATATGGAAATGTATTATTTTTCATTGAACGTGCTATTTCG
GAGTAAATGGAAAATGTTGGAAATCGGAACAACAAAAGACTCATAATTGA
CTCTGAACGGTTAAAGTTGCTTCTTTCCCAAAGATACACAATCGTCGAAA
TAGCCAAAAATGGTTTACTTGGAAAAGTTGTACATCCCAATACTGTGCAT
AATGCTTGCAAAAGATTTGGCCTAGACTCGGGAAGAAAATTGTACAGTCG
ATTGACACACGATCAGTTGAAAGAAAAGATTACGgaaataaataaacaat
ttCCCAACTCAGGATCGGAAGAGGTATTGAGTCACTTAAAGGGACAAGGA
ATTATATTACAACGAGACAAGTGTAGAGAGTTGTTGCGCCAAGTTGACCC
AGAAGGTGTTGCTATGAGATGGGCTCAAACAATCAAAAGACGGCAGTATC
GTGTTCCAACCCCAAACTCTCTATGGCATATTGACactcatcacaaattg
attagATGGAATTTTGTCACACATGGATGCATTGATGGTTTTTCAAGACT
TGTTTCGATGTTGAAAGTCTCTGCCGATAATCTCGCAAGCACGGCACTGA
ACTTTTTTGTCGAAGGAATCAAAGAATATGGTATTCCAAGTCGTTTGCGT
CTAGATAAAGGATCAGAGTTTGTACACGTTCGATCTTTGATGGAGTACTT
TAATGGTGAAGAAAGAGGAAGCCAAATTTCAGGTCGTTCGGTTCATAACC
AGAGGATCGAGCGCCTTTGGCGTGATGTTTATACGAAAGTAGTTGAAAAG
TATTACAAGATTTTTTATCATATGGAAGATCACGGGATCCTGGATTTGGA
AAATCCGATTCATCTCTATGCGTTACAATACACATATTTACCAAGAATCC
AGAGCGATTTAGACACGTGGAGAAATGCACACAATTGCCATCGCATTCGA
ACCGAGAACAACAAAACACCGATGCAACTTTGGATTGCTGAGAGTATTCG
TCATCAAGATTCGAATTCCACAGCAATGACGAATCTCTTCGCTAGAGACG
AAAATACTGCACTTGAAGAATTCTTCATTGATAACCCCATGCACGAGCCA
AATGATATAAAAGTTGTTTTGCCTAGGATTGAAGCGCCTTTGACAGCTGC
CCAACAGGCTCGACTGTCAGTTGATATCAATGTTTTAGCACCCTCTCATT
CACATGGAATTGATTTATATGGAAATGTATTATTTTTCATTGAACGTGCT
ATTTCGGAGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00039924-exon-sc0002244-1491911889:8592..9072 | TCONS_00039924-exon-sc0002244-1491911889:8592..9072 | Clytia hemisphaerica | exon |
| TCONS_00039924-exon-sc0002244-1510915933:8592..9072 | TCONS_00039924-exon-sc0002244-1510915933:8592..9072 | Clytia hemisphaerica | exon |
| TCONS_00039924-exon-sc0002244-1575043694:8592..9072 | TCONS_00039924-exon-sc0002244-1575043694:8592..9072 | Clytia hemisphaerica | exon |
| TCONS_00039924-exon-sc0002244-1491911889:9426..10307 | TCONS_00039924-exon-sc0002244-1491911889:9426..10307 | Clytia hemisphaerica | exon |
| TCONS_00039924-exon-sc0002244-1510915933:9426..10307 | TCONS_00039924-exon-sc0002244-1510915933:9426..10307 | Clytia hemisphaerica | exon |
| TCONS_00039924-exon-sc0002244-1575043694:9426..10307 | TCONS_00039924-exon-sc0002244-1575043694:9426..10307 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002244 | supercontig | sc0002244:8592..10307 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0015074 | DNA integration |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0015074 |
DNA integration |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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