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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00039921 ID=TCONS_00039921|Name=TCONS_00039921|organism=Clytia hemisphaerica|type=transcript|length=1494bp
ATTACGTCAACAAGTTCATCATTGGATATCGAGTCCGCACATTTGCCTAA
GTAGTGAAGTAGTTGTGTCACTGTCGATCACTTGCCCATGAACCCATGTT
GTTTGGTTGATAGCAATTTCTCTTTCGTGAGGTGTTCCattatttgtttc
tttaggATTCTTTCCATTACTCTACACGCAACTGATGTTAAACTAACGGG
CCTGTAATTTTTTGCAAggttcttttttcctttcttgtagATCGGGGNGC
TTTTTGATGGAAACCTGTAACCCAGTCAGAGTTCTCAAGATGTCCTttca
ttgcttcaaaatctGCCTTATTGTAGTTATAGTTTTTAATAATGCATTCT
GTTGCAAGGTAACATTCGAACGTAAATGATAGAACACTGTGATCACTTTT
ATGAAGTGGTGAAAGATAGGTTATGTTGCTAACCTGGCTTTCTTCATTTG
TCAGAATCTGGTCAATAATTGATGGCGTATCGGTACCTCTAGCTCTTGTT
GGTTCATTGACGTGTTGGTAAAAGAAGGAGTCTCTTAAAGCTTCGAGAAA
TTGTTCGTCTTCCTTCGTGTCATCGTGAGGAGTTGACCAGTTTTCACAAT
TGATATCTTTATAGTTGAAGTCACCGACGATACACTTATGACTGTATTTC
TTATTCATTGATATTTCCTTCAGAAGAAGATTAAGTGCTGTATTGTTTTT
TGCTGATGTTGGCGTGTTGGTTGGACTTCGATACATACATCCAAAAAGCA
AAGAATACGCTCCTTTGAGTTTGATTTCCAGCAAGCATACCTCCTGAAAT
TCACTATTGGGTGTCACTTCGACTACATTTTTGATCGATTTATGTGTCAA
AACGATGATTCCACGTCCAACATTATTTAAGGCATTTGTTTCGTAGGGTT
CGGAGTAGCCTTCAATGTGGTAGTCTTGTATAAGACgttcttttttcgaa
tgtttcggTTCTATTCACAAATTGCAATGACATCGGGTTGTTCTTTTGAA
ATCACTTCATTTAgttcttttctctttattttagTTAGTTGGTCTGCATA
AGTATATAGTATGTTAAGGTTTTTTCGTTTGTTAGTTTGTTCGTCTTTCT
TCTTTGTTACGTCTTTTTTTCGTGTTTGGTTTATTGCCGATCTTTGGCAT
TTATCTTCTTTACACCGAATCCGTTTTTTGCAAAACCCCGCACTCTCCAG
ACTCCATCTTTTTCGGTTTGATTTCGTGCCTTAGCATCTTCTGCCGCCTC
tttgtacttttttctttgaGCTAGAGTTAGATCTTCGCAAATGCTCATCC
CCTTATAGGCATCAATTCCTTTTAGCGCTGGGAGATTTCCTAAAACATTC
ATTTTCTCTTCCTCACTGTTCAGAGTAACAATGAGGTGACGCTTTTTCCC
GTCTACTGATTTGCCAATTCTTGAGATATACTTGATGTTAATTTTGACGT
GGAGCTTTTCGATGAGTGTTTTCACCCATGCTTCATCTTTTTTN Run BLAST on NCBI protein sequence of TCONS_00039921-protein >TCONS_00039921-protein ID=TCONS_00039921-protein|Name=TCONS_00039921-protein|organism=Clytia hemisphaerica|type=polypeptide|length=182bp
MYRSPTNTPTSAKNNTALNLLLKEISMNKKYSHKCIVGDFNYKDINCENW
STPHDDTKEDEQFLEALRDSFFYQHVNEPTRARGTDTPSIIDQILTNEES
QVSNITYLSPLHKSDHSVLSFTFECYLATECIIKNYNYNKADFEAMKGHL
ENSDWVTGFHQKXPRSTRKEKRTLQKITGPLV Run BLAST on NCBI transcript from alignment at sc0002242:9371..10864 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00039921 ID=TCONS_00039921|Name=TCONS_00039921|organism=Clytia hemisphaerica|type=transcript|length=1494bp|location=Sequence derived from alignment at sc0002242:9371..10864 (Clytia hemisphaerica)
NAAAAAAGATGAAGCATGGGTGAAAACACTCATCGAAAAGCTCCACGTCA
AAATTAACATCAAGTATATCTCAAGAATTGGCAAATCAGTAGACGGGAAA
AAGCGTCACCTCATTGTTACTCTGAACAGTGAGGAAGAGAAAATGAATGT
TTTAGGAAATCTCCCAGCGCTAAAAGGAATTGATGCCTATAAGGGGATGA
GCATTTGCGAAGATCTAACTCTAGCtcaaagaaaaaagtacaaaGAGGCG
GCAGAAGATGCTAAGGCACGAAATCAAACCGAAAAAGATGGAGTCTGGAG
AGTGCGGGGTTTTGCAAAAAACGGATTCGGTGTAAAGAAGATAAATGCCA
AAGATCGGCAATAAACCAAACACGAAAAAAAGACGTAACAAAGAAGAAAG
ACGAACAAACTAACAAACGAAAAAACCTTAACATACTATATACTTATGCA
GACCAACTAActaaaataaagagaaaagaacTAAATGAAGTGATTTCAAA
AGAACAACCCGATGTCATTGCAATTTGTGAATAGAAccgaaacattcgaa
aaaagaacGTCTTATACAAGACTACCACATTGAAGGCTACTCCGAACCCT
ACGAAACAAATGCCTTAAATAATGTTGGACGTGGAATCATCGTTTTGACA
CATAAATCGATCAAAAATGTAGTCGAAGTGACACCCAATAGTGAATTTCA
GGAGGTATGCTTGCTGGAAATCAAACTCAAAGGAGCGTATTCTTTGCTTT
TTGGATGTATGTATCGAAGTCCAACCAACACGCCAACATCAGCAAAAAAC
AATACAGCACTTAATCTTCTTCTGAAGGAAATATCAATGAATAAGAAATA
CAGTCATAAGTGTATCGTCGGTGACTTCAACTATAAAGATATCAATTGTG
AAAACTGGTCAACTCCTCACGATGACACGAAGGAAGACGAACAATTTCTC
GAAGCTTTAAGAGACTCCTTCTTTTACCAACACGTCAATGAACCAACAAG
AGCTAGAGGTACCGATACGCCATCAATTATTGACCAGATTCTGACAAATG
AAGAAAGCCAGGTTAGCAACATAACCTATCTTTCACCACTTCATAAAAGT
GATCACAGTGTTCTATCATTTACGTTCGAATGTTACCTTGCAACAGAATG
CATTATTAAAAACTATAACTACAATAAGGCagattttgaagcaatgaaAG
GACATCTTGAGAACTCTGACTGGGTTACAGGTTTCCATCAAAAAGCNCCC
CGATctacaagaaaggaaaaaagaaccTTGCAAAAAATTACAGGCCCGTT
AGTTTAACATCAGTTGCGTGTAGAGTAATGGAAAGAATcctaaagaaaca
aataatGGAACACCTCACGAAAGAGAAATTGCTATCAACCAAACAACATG
GGTTCATGGGCAAGTGATCGACAGTGACACAACTACTTCACTACTTAGGC
AAATGTGCGGACTCGATATCCAATGATGAACTTGTTGACGTAAT Coding sequence (CDS) from alignment at sc0002242:9371..10864 >TCONS_00039921 ID=TCONS_00039921|Name=TCONS_00039921|organism=Clytia hemisphaerica|type=CDS|length=549bp|location=Sequence derived from alignment at sc0002242:9371..10864 (Clytia hemisphaerica)
ATGTATCGAAGTCCAACCAACACGCCAACATCAGCAAAAAACAATACAGC
ACTTAATCTTCTTCTGAAGGAAATATCAATGAATAAGAAATACAGTCATA
AGTGTATCGTCGGTGACTTCAACTATAAAGATATCAATTGTGAAAACTGG
TCAACTCCTCACGATGACACGAAGGAAGACGAACAATTTCTCGAAGCTTT
AAGAGACTCCTTCTTTTACCAACACGTCAATGAACCAACAAGAGCTAGAG
GTACCGATACGCCATCAATTATTGACCAGATTCTGACAAATGAAGAAAGC
CAGGTTAGCAACATAACCTATCTTTCACCACTTCATAAAAGTGATCACAG
TGTTCTATCATTTACGTTCGAATGTTACCTTGCAACAGAATGCATTATTA
AAAACTATAACTACAATAAGGCagattttgaagcaatgaaAGGACATCTT
GAGAACTCTGACTGGGTTACAGGTTTCCATCAAAAAGCNCCCCGATctac
aagaaaggaaaaaagaaccTTGCAAAAAATTACAGGCCCGTTAGTTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00039921-exon-sc0002242-1491911889:9371..10864 | TCONS_00039921-exon-sc0002242-1491911889:9371..10864 | Clytia hemisphaerica | exon |
| TCONS_00039921-exon-sc0002242-1510915933:9371..10864 | TCONS_00039921-exon-sc0002242-1510915933:9371..10864 | Clytia hemisphaerica | exon |
| TCONS_00039921-exon-sc0002242-1575043694:9371..10864 | TCONS_00039921-exon-sc0002242-1575043694:9371..10864 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002242 | supercontig | sc0002242:9371..10864 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR005135 | Endo/exonuclease/phosphatase |
Blast
The following BLAST results are available for this feature:
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