|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00039913 ID=TCONS_00039913|Name=TCONS_00039913|organism=Clytia hemisphaerica|type=transcript|length=738bp
CTCTTCTTTCTTGGCCCATGCGTCTCGCCACAAGGGTCGGATATTAGGGC
TGGTAAACTTGTCCAGGCGACTGGCGAAGGCAAATGCATCTCTGATAGGT
CTTCCGAATACGATTTGGGCTGGAGATAACTCACAATCACGATCAGGGGT
GTTGCGAAGTTGCATCATGGCGCGGAGGAAGCGATCAGTATCAAGGCTAC
CACCGGGTCCAGTGCTTGATCGTAGCAGACGATGGTTGACGCCCCATTTC
TTCAAGAAGGTCTCCGTAGCATTGGATATGAATTCAGGACCACCGTCACT
CGAGATTTCAGTTGGCACGCCAAATCGGGAAAAATAGTTACGCAAGCATG
CGATGAGGCCCTCTGATCCAGATTGAGGAGAGCCGTGCGGAGCTTTGAAT
ACGTCTGACCATCCTGACAGTCTATCACCGACGACCAGGTAGTGTTGGGC
TGCAGAGTCAAAGTAATCGACATGAATCATCTCGAACGGAGTTGATGGTG
GGTTAGAGACAATTGCTGGAAGTGGCGGGTTAGACGGAGCGTTTTTGTTG
CAGTCTTGACAGGATTGTCGCACACGTTCAATGTCCTCTGTGATACCAGG
CAAAAAGATGATTATTCTAGCACGGGCACCCATTGTCGATACTCCTTGAT
GTGCTGAATGGAGAACTACAAGGGTAGCCGGGCGAAGAGATGGTGGGATA
ACAGCACGGTCATCGAAAACTACTACACCGTCAGTTAG Run BLAST on NCBI protein sequence of TCONS_00039913-protein >TCONS_00039913-protein ID=TCONS_00039913-protein|Name=TCONS_00039913-protein|organism=Clytia hemisphaerica|type=polypeptide|length=246bp
LTDGVVVFDDRAVIPPSLRPATLVVLHSAHQGVSTMGARARIIIFLPGIT
EDIERVRQSCQDCNKNAPSNPPLPAIVSNPPSTPFEMIHVDYFDSAAQHY
LVVGDRLSGWSDVFKAPHGSPQSGSEGLIACLRNYFSRFGVPTEISSDGG
PEFISNATETFLKKWGVNHRLLRSSTGPGGSLDTDRFLRAMMQLRNTPDR
DCELSPAQIVFGRPIRDAFAFASRLDKFTSPNIRPLWRDAWAKKEE Run BLAST on NCBI transcript from alignment at sc0002239:6273..7010 Legend: exonCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00039913 ID=TCONS_00039913|Name=TCONS_00039913|organism=Clytia hemisphaerica|type=transcript|length=738bp|location=Sequence derived from alignment at sc0002239:6273..7010 (Clytia hemisphaerica)
CTAACTGACGGTGTAGTAGTTTTCGATGACCGTGCTGTTATCCCACCATC
TCTTCGCCCGGCTACCCTTGTAGTTCTCCATTCAGCACATCAAGGAGTAT
CGACAATGGGTGCCCGTGCTAGAATAATCATCTTTTTGCCTGGTATCACA
GAGGACATTGAACGTGTGCGACAATCCTGTCAAGACTGCAACAAAAACGC
TCCGTCTAACCCGCCACTTCCAGCAATTGTCTCTAACCCACCATCAACTC
CGTTCGAGATGATTCATGTCGATTACTTTGACTCTGCAGCCCAACACTAC
CTGGTCGTCGGTGATAGACTGTCAGGATGGTCAGACGTATTCAAAGCTCC
GCACGGCTCTCCTCAATCTGGATCAGAGGGCCTCATCGCATGCTTGCGTA
ACTATTTTTCCCGATTTGGCGTGCCAACTGAAATCTCGAGTGACGGTGGT
CCTGAATTCATATCCAATGCTACGGAGACCTTCTTGAAGAAATGGGGCGT
CAACCATCGTCTGCTACGATCAAGCACTGGACCCGGTGGTAGCCTTGATA
CTGATCGCTTCCTCCGCGCCATGATGCAACTTCGCAACACCCCTGATCGT
GATTGTGAGTTATCTCCAGCCCAAATCGTATTCGGAAGACCTATCAGAGA
TGCATTTGCCTTCGCCAGTCGCCTGGACAAGTTTACCAGCCCTAATATCC
GACCCTTGTGGCGAGACGCATGGGCCAAGAAAGAAGAG Coding sequence (CDS) from alignment at sc0002239:6273..7010 >TCONS_00039913 ID=TCONS_00039913|Name=TCONS_00039913|organism=Clytia hemisphaerica|type=CDS|length=738bp|location=Sequence derived from alignment at sc0002239:6273..7010 (Clytia hemisphaerica)
CTAACTGACGGTGTAGTAGTTTTCGATGACCGTGCTGTTATCCCACCATC
TCTTCGCCCGGCTACCCTTGTAGTTCTCCATTCAGCACATCAAGGAGTAT
CGACAATGGGTGCCCGTGCTAGAATAATCATCTTTTTGCCTGGTATCACA
GAGGACATTGAACGTGTGCGACAATCCTGTCAAGACTGCAACAAAAACGC
TCCGTCTAACCCGCCACTTCCAGCAATTGTCTCTAACCCACCATCAACTC
CGTTCGAGATGATTCATGTCGATTACTTTGACTCTGCAGCCCAACACTAC
CTGGTCGTCGGTGATAGACTGTCAGGATGGTCAGACGTATTCAAAGCTCC
GCACGGCTCTCCTCAATCTGGATCAGAGGGCCTCATCGCATGCTTGCGTA
ACTATTTTTCCCGATTTGGCGTGCCAACTGAAATCTCGAGTGACGGTGGT
CCTGAATTCATATCCAATGCTACGGAGACCTTCTTGAAGAAATGGGGCGT
CAACCATCGTCTGCTACGATCAAGCACTGGACCCGGTGGTAGCCTTGATA
CTGATCGCTTCCTCCGCGCCATGATGCAACTTCGCAACACCCCTGATCGT
GATTGTGAGTTATCTCCAGCCCAAATCGTATTCGGAAGACCTATCAGAGA
TGCATTTGCCTTCGCCAGTCGCCTGGACAAGTTTACCAGCCCTAATATCC
GACCCTTGTGGCGAGACGCATGGGCCAAGAAAGAAGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00039913-exon-sc0002239-1491911889:6273..7010 | TCONS_00039913-exon-sc0002239-1491911889:6273..7010 | Clytia hemisphaerica | exon |
| TCONS_00039913-exon-sc0002239-1510915933:6273..7010 | TCONS_00039913-exon-sc0002239-1510915933:6273..7010 | Clytia hemisphaerica | exon |
| TCONS_00039913-exon-sc0002239-1575043694:6273..7010 | TCONS_00039913-exon-sc0002239-1575043694:6273..7010 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002239 | supercontig | sc0002239:6273..7010 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0015074 | DNA integration |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0015074 |
DNA integration |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
|
