TCONS_00039912 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039912
Unique NameTCONS_00039912
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length441

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039912 ID=TCONS_00039912|Name=TCONS_00039912|organism=Clytia hemisphaerica|type=transcript|length=441bp
CTTTGCCAAAAATGTTTTCGTACAAACTACGAATAAATGTTATATCTTTA
TAATAAGGTTCGTCGAAATGTATCACCAATAAATATTCTTGAAACCGATT
CTTTAAACAATCTGTTTTTGCCAATGTCAAAATTGATCGAACATCTGAAT
CTAAAgtgtcacgtgaccgaaaaatagCAAATAAACAAACAAGAATAAAA
CATAATACAATGCATTGATATATTGGAGGTTTGGTCTTGGATGATTGAAG
AAAAACCTTGTATTTCAATGAATATCTTATTGGTTTATCACTGAGGTCTA
CCATCTTTGATAACacataaaaatcataacatcAANCCTTGTATTTCAAT
GAATATCTTATTGGTTTATCACTGAGGTCTACCATCTTTGATAACacata
aaaatcataacatcAACAACACACGTCGCTTTGAATCAAAA
Run BLAST on NCBI

protein sequence of TCONS_00039912-protein

>TCONS_00039912-protein ID=TCONS_00039912-protein|Name=TCONS_00039912-protein|organism=Clytia hemisphaerica|type=polypeptide|length=101bp
MVDLSDKPIRYSLKYKVFLQSSKTKPPIYQCIVLCFILVCLFAIFRSRDT
LDSDVRSILTLAKTDCLKNRFQEYLLVIHFDEPYYKDITFIRSLYENIFG
K
Run BLAST on NCBI

transcript from alignment at sc0002238:17406..17846

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039912 ID=TCONS_00039912|Name=TCONS_00039912|organism=Clytia hemisphaerica|type=transcript|length=441bp|location=Sequence derived from alignment at sc0002238:17406..17846 (Clytia hemisphaerica)
TTTTGATTCAAAGCGACGTGTGTTGTTgatgttatgatttttatgtGTTA
TCAAAGATGGTAGACCTCAGTGATAAACCAATAAGATATTCATTGAAATA
CAAGGNTTgatgttatgatttttatgtGTTATCAAAGATGGTAGACCTCA
GTGATAAACCAATAAGATATTCATTGAAATACAAGGTTTTTCTTCAATCA
TCCAAGACCAAACCTCCAATATATCAATGCATTGTATTATGTTTTATTCT
TGTTTGTTTATTTGctatttttcggtcacgtgacacTTTAGATTCAGATG
TTCGATCAATTTTGACATTGGCAAAAACAGATTGTTTAAAGAATCGGTTT
CAAGAATATTTATTGGTGATACATTTCGACGAACCTTATTATAAAGATAT
AACATTTATTCGTAGTTTGTACGAAAACATTTTTGGCAAAG

Coding sequence (CDS) from alignment at sc0002238:17406..17846

>TCONS_00039912 ID=TCONS_00039912|Name=TCONS_00039912|organism=Clytia hemisphaerica|type=CDS|length=303bp|location=Sequence derived from alignment at sc0002238:17406..17846 (Clytia hemisphaerica)
ATGGTAGACCTCAGTGATAAACCAATAAGATATTCATTGAAATACAAGGT
TTTTCTTCAATCATCCAAGACCAAACCTCCAATATATCAATGCATTGTAT
TATGTTTTATTCTTGTTTGTTTATTTGctatttttcggtcacgtgacacT
TTAGATTCAGATGTTCGATCAATTTTGACATTGGCAAAAACAGATTGTTT
AAAGAATCGGTTTCAAGAATATTTATTGGTGATACATTTCGACGAACCTT
ATTATAAAGATATAACATTTATTCGTAGTTTGTACGAAAACATTTTTGGC
AAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024163XLOC_024163Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039912-proteinTCONS_00039912-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039912-exon-sc0002238-1491911889:17406..17846TCONS_00039912-exon-sc0002238-1491911889:17406..17846Clytia hemisphaericaexon
TCONS_00039912-exon-sc0002238-1510915933:17406..17846TCONS_00039912-exon-sc0002238-1510915933:17406..17846Clytia hemisphaericaexon
TCONS_00039912-exon-sc0002238-1575043694:17406..17846TCONS_00039912-exon-sc0002238-1575043694:17406..17846Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002238supercontigsc0002238:17406..17846 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	1.95786	0.662832	1.22506	2.56781	0.823796	0.727885	0	0.841029	0.654534	0.108323	0.195026	0.539621	0	0	0.487676	0.170106	0	0.0045644	0	0.318813	0	0.146531	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039912 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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