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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00039910 ID=TCONS_00039910|Name=TCONS_00039910|organism=Clytia hemisphaerica|type=transcript|length=334bp
atttttttctgttttttttttagatgaCTCAAAGAAAGACtgCACAAAGG
TTTATAAAGACTGTGTTGCTAAATTACCCAACCCAAAAGACAGAAGGGGA
AGAATGAAATGTGGTGGTCTCTACTTGAAATGCAAATACCTTCCAACACA
AATGAAATGCGTTTACAAGTGCTTTGCCTACACACGTGCCTGTATGAAGA
AAGCTACCGATATGGCTGGAAAGAAAGCTTGTGGAATGAAAGGAAAAGCT
TGTCTTGCTAAATGTTAAATTTTGTCACcatcttttgtaatttttcttcg
tttcaataagaaaaaatgaaagttatttaaaatg Run BLAST on NCBI transcript from alignment at sc0002238:12531..13987- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00039910 ID=TCONS_00039910|Name=TCONS_00039910|organism=Clytia hemisphaerica|type=transcript|length=1457bp|location=Sequence derived from alignment at sc0002238:12531..13987- (Clytia hemisphaerica)
ATTTTTTTCTGTTTTTTTTTTAGATGACTCAAAGAAAGACGTAAGTTATG
ATTTACATTTTCTTTCATATTCAATAGATTAAAATCTTTTACCAATAGAA
AATTTGTGCTAGCATCCAAATGATCTCCAATTACCTTTGTAAATAAGTAC
GTGATTGATAAAACCGGAAAAATGATTATCATAGTGGACCAGCGAGAAGT
AGGTTTGCTAAATTTCCGAAGAAATAAGATACAAGCAATTAGATACTTTC
TTTGATACATCTCTAGCTATGTCCTGTGAACCCGCTGGCACCCTTTGACG
CTTTAACGCATACTACAGACATGGAGACTGGATGTTCTTAGGTCAAGGAT
ACAATATAGGGTCACTTTATCAAGTAATACGATATTTTCTCTTTTTTTTC
AGTGCACAAAGGTTTATAAAGACTGTGTTGCTAAATTACCCAACCCAAAA
GACAGAAGGGGAAGAATGAAATGTGGTGGTCTCTACTTGAAATGCAAATA
CCTTCCAACACAAATGAAATGCGTTTACAAGGTGAGTAAACCTATACCAC
CAAGCTTGTCACCAGCGTATTATAAGGTTCTTCCATATTTACTGTCGGCG
CTGGATGGTACGTAAATTAAGCCTGGAATGGAATTTTCCAGAAAAAAACT
TTACCCCCTGAAGATATTGATTTTTCGAAGTATCGATATCCTACTTTAAT
AGTAAAGACACCTGGATATCCACTCTTAAAAATATGCTCAACCCCCTGGA
TATCCTCTCTTATAAAGATGTTTACCCCTGGATATCGTATTTTTTACTTG
AAAAGACATTTTACCCCTGGATATCCGCTCCCTTATAGATATTTAACCCC
CTGGAAATCCACTTTAAAAAAATCGTTAACCCTCTGGATATTCGATATCC
TCAACAGGGAGCACGGACTATTTCTGGAAAGCCCAATACACGAGGACGAG
CTAGCACAAAACACCAAAACAACGTCCAGTTAACAACGATAAGATTAAAA
AACTATTGTTTGAATGTCTTAGTGATCAAAGAAAGTCATATAAAAATGAT
TTTTGAGTGTTGAACTTTGAGCTGAGATTATCCAAGGTTACAATCGAGGA
TTGAAAATTCCAGTTACTCAATAATAGACCAATGCAGTTTTACTCGGTCA
ACTTGTTTTTACCTGTTTGAAAGACTTATCCCTATACTGGAGAAATCCTT
TTAGTGGTAAAAATACCTTAAAATTTGAAAATTTCTTAAAATTAACAAGA
TTTAGGATTCTACTGATTGCCATTGTTTTCTTTTTTTCGCAGTGCTTTGC
CTACACACGTGCCTGTATGAAGAAAGCTACCGATATGGCTGGAAAGAAAG
CTTGTGGAATGAAAGGAAAAGCTTGTCTTGCTAAATGTTAAATTTTGTCA
CCATCTTTTGTAATTTTTCTTCGTTTCAATAAGAAAAAATGAAAGTTATT
TAAAATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00039910-exon-sc0002238-1575043694:13948..13987 | TCONS_00039910-exon-sc0002238-1575043694:13948..13987 | Clytia hemisphaerica | exon |
| TCONS_00039910-exon-sc0002238-1575043694:13457..13585 | TCONS_00039910-exon-sc0002238-1575043694:13457..13585 | Clytia hemisphaerica | exon |
| TCONS_00039910-exon-sc0002238-1575043694:12531..12695 | TCONS_00039910-exon-sc0002238-1575043694:12531..12695 | Clytia hemisphaerica | exon |
| TCONS_00039910-exon-sc0002238-1510915933:13948..13987 | TCONS_00039910-exon-sc0002238-1510915933:13948..13987 | Clytia hemisphaerica | exon |
| TCONS_00039910-exon-sc0002238-1510915933:13457..13585 | TCONS_00039910-exon-sc0002238-1510915933:13457..13585 | Clytia hemisphaerica | exon |
| TCONS_00039910-exon-sc0002238-1510915933:12531..12695 | TCONS_00039910-exon-sc0002238-1510915933:12531..12695 | Clytia hemisphaerica | exon |
| TCONS_00039910-exon-sc0002238-1491911889:13948..13987 | TCONS_00039910-exon-sc0002238-1491911889:13948..13987 | Clytia hemisphaerica | exon |
| TCONS_00039910-exon-sc0002238-1491911889:13457..13585 | TCONS_00039910-exon-sc0002238-1491911889:13457..13585 | Clytia hemisphaerica | exon |
| TCONS_00039910-exon-sc0002238-1491911889:12531..12695 | TCONS_00039910-exon-sc0002238-1491911889:12531..12695 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002238 | supercontig | sc0002238:12531..13987 - |
Blast
The following BLAST results are available for this feature:
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