TCONS_00039894 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039894
Unique NameTCONS_00039894
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length446

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039894 ID=TCONS_00039894|Name=TCONS_00039894|organism=Clytia hemisphaerica|type=transcript|length=446bp
CTGCTGGTAGGGCTGCGGTACATGCATgcaaaaaccagtaagtcattaCC
ACTTACGCGAACTTCTATGATACAAGCTTCAATAAAGTTGacttgattta
ttgatttggtCACATTAACAATCAAATGCTGAGCTGATGCGTGGGCAAGA
ATGATAACTCCACGGCCAATGTTGGTATCTATATTCGTATGACAAACAAC
TTTATAATCTTTGAATTCGTACTCGTGTAGTTCTCTTAGTGTTCCATGTT
TTGGTTTTACTTCACATATGGCAACAATGTGTGGTTGTTGTTTCTCTACG
TTTTGTATAAGTTCTTTCTTTTTGCCTGATGTTAGAATATCAGCGTTGCA
GTAATAAAACCTGATACCATTTATTGTTAGGTCATGGCGAGAAACTTGAT
TCAGACCTTTTTGAtttattgttcttttgttttttgtgtttgaGTG
Run BLAST on NCBI

protein sequence of TCONS_00039894-protein

>TCONS_00039894-protein ID=TCONS_00039894-protein|Name=TCONS_00039894-protein|organism=Clytia hemisphaerica|type=polypeptide|length=148bp
HSNTKNKRTINQKGLNQVSRHDLTINGIRFYYCNADILTSGKKKELIQNV
EKQQPHIVAICEVKPKHGTLRELHEYEFKDYKVVCHTNIDTNIGRGVIIL
AHASAQHLIVNVTKSINQVNFIEACIIEVRVSGNDLLVFACMYRSPTS
Run BLAST on NCBI

transcript from alignment at sc0002232:10333..10778

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039894 ID=TCONS_00039894|Name=TCONS_00039894|organism=Clytia hemisphaerica|type=transcript|length=446bp|location=Sequence derived from alignment at sc0002232:10333..10778 (Clytia hemisphaerica)
CACtcaaacacaaaaaacaaaagaacaataaaTCAAAAAGGTCTGAATCA
AGTTTCTCGCCATGACCTAACAATAAATGGTATCAGGTTTTATTACTGCA
ACGCTGATATTCTAACATCAGGCAAAAAGAAAGAACTTATACAAAACGTA
GAGAAACAACAACCACACATTGTTGCCATATGTGAAGTAAAACCAAAACA
TGGAACACTAAGAGAACTACACGAGTACGAATTCAAAGATTATAAAGTTG
TTTGTCATACGAATATAGATACCAACATTGGCCGTGGAGTTATCATTCTT
GCCCACGCATCAGCTCAGCATTTGATTGTTAATGTGaccaaatcaataaa
tcaagtCAACTTTATTGAAGCTTGTATCATAGAAGTTCGCGTAAGTGGta
atgacttactggtttttgcATGCATGTACCGCAGCCCTACCAGCAG

Coding sequence (CDS) from alignment at sc0002232:10333..10778

>TCONS_00039894 ID=TCONS_00039894|Name=TCONS_00039894|organism=Clytia hemisphaerica|type=CDS|length=444bp|location=Sequence derived from alignment at sc0002232:10333..10778 (Clytia hemisphaerica)
CACtcaaacacaaaaaacaaaagaacaataaaTCAAAAAGGTCTGAATCA
AGTTTCTCGCCATGACCTAACAATAAATGGTATCAGGTTTTATTACTGCA
ACGCTGATATTCTAACATCAGGCAAAAAGAAAGAACTTATACAAAACGTA
GAGAAACAACAACCACACATTGTTGCCATATGTGAAGTAAAACCAAAACA
TGGAACACTAAGAGAACTACACGAGTACGAATTCAAAGATTATAAAGTTG
TTTGTCATACGAATATAGATACCAACATTGGCCGTGGAGTTATCATTCTT
GCCCACGCATCAGCTCAGCATTTGATTGTTAATGTGaccaaatcaataaa
tcaagtCAACTTTATTGAAGCTTGTATCATAGAAGTTCGCGTAAGTGGta
atgacttactggtttttgcATGCATGTACCGCAGCCCTACCAGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024146XLOC_024146Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039894-exon-sc0002232-1491911889:10333..10778TCONS_00039894-exon-sc0002232-1491911889:10333..10778Clytia hemisphaericaexon
TCONS_00039894-exon-sc0002232-1510915933:10333..10778TCONS_00039894-exon-sc0002232-1510915933:10333..10778Clytia hemisphaericaexon
TCONS_00039894-exon-sc0002232-1575043694:10333..10778TCONS_00039894-exon-sc0002232-1575043694:10333..10778Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039894-proteinTCONS_00039894-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002232supercontigsc0002232:10333..10778 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.57278	2.29624	4.47576	4.62582	0.728236	0.398948	0.895169	1.44141	0.756871	0	0	0.359629	0.533718	0.721038	0.907231	0.917491	1.40967	0.800216	0.318258	0	1.19801	2.399	0	0.376787	0.734556	0.14344	0.913802	1.10736	1.23537	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR005135Endo/exonuclease/phosphatase
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039894 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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