TCONS_00039893 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039893
Unique NameTCONS_00039893
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length800

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039893 ID=TCONS_00039893|Name=TCONS_00039893|organism=Clytia hemisphaerica|type=transcript|length=800bp
ACCACCTTCTTCCGAAAATGGATTGCCGAATGATTATTTGGGATTGAAGA
TGCCACCTCGAAGGAACCCTGCTGGTCGACCAAAGTTGCGCCCTGTAGGT
TTACCTTACAACAAAAGAAAGCATGTTTCCGATAAGAAAGTTCCTGCtgc
aaagaaaagaaagaaatcagACAACCAAATCGTTTTTAATGAGAATTTGT
CCACAAAGACTGTTTCACGGGTGTCTAGTTCATCATTCAATTCAAACTTG
gatattttcaatttgaaactACCAGTTTGGGGAGGTTCACTGAATCATTC
TGGTCAAACTCTTATATTTTCGGACACTTGCTTGGTAGACAGCTGGATCA
CTCTTTTGAAAATTGCCTTTTTGAACTGGCCACATCTTCGTACCCACAAG
TCCTTTCCCTCCAAAATGCAACAAGTAATGGAACTGGTAGATGCAGACCT
TTACGATGAAGTCAAACTCAAGTTTGCAGTTTGGAATAGTATACCTCTTG
ATAAAGGAGCagttaatttttttggaaatgagcGAGCAATGTTCTTAGAT
CATTTATTGCCGCACGATTTCACAATCGAATCGGTTTGTTCTAGTGAGAT
ATGCCCTCAAAAGGATTTGACAGTACGTTGTTCGGGCTACCCAACAATCA
CTGATGCCTCTCACTCGCACTTCGCTTTACCTCACACTCAAATCATCAAT
TGTTTTTTTGAGGAAGAGTCTGTTCGTCAGTGTGGAAGAAAAATGTTGCA
CCCTACCAATGATGACAATACGTTTTGGCAAACTAATACCGAAACAGGGT
Run BLAST on NCBI

protein sequence of TCONS_00039893-protein

>TCONS_00039893-protein ID=TCONS_00039893-protein|Name=TCONS_00039893-protein|organism=Clytia hemisphaerica|type=polypeptide|length=266bp
PPSSENGLPNDYLGLKMPPRRNPAGRPKLRPVGLPYNKRKHVSDKKVPAA
KKRKKSDNQIVFNENLSTKTVSRVSSSSFNSNLDIFNLKLPVWGGSLNHS
GQTLIFSDTCLVDSWITLLKIAFLNWPHLRTHKSFPSKMQQVMELVDADL
YDEVKLKFAVWNSIPLDKGAVNFFGNERAMFLDHLLPHDFTIESVCSSEI
CPQKDLTVRCSGYPTITDASHSHFALPHTQIINCFFEEESVRQCGRKMLH
PTNDDNTFWQTNTETG
Run BLAST on NCBI

transcript from alignment at sc0002232:22216..23986-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039893 ID=TCONS_00039893|Name=TCONS_00039893|organism=Clytia hemisphaerica|type=transcript|length=1771bp|location=Sequence derived from alignment at sc0002232:22216..23986- (Clytia hemisphaerica)
ACCACCTTCTTCCGAAAATGGATTGCCGAATGGTAAGGAAATGGATTTGC
TGCAATAGATACATTTTTCAAATCAAATGTTTCAAGTCCTCCCAATATAT
TGATTTTTTGTTATGTATTTCAAGATTATTTGGGATTGAAGATGCCACCT
CGAAGGAACCCTGCTGGTCGACCAAAGTTGCGCCCTGTAGGTTTACCTTA
CAACAAAAGAAAGCATGTTTCCGATAAGAAAGGTAAAACCAGCTATTTAA
TTTCAATACTTAACTTGCACCTAAAAAGTGACCTGTGTTCAATACAGACA
CTTCTTTTTGTAATAGTACTTAGGGGCAAGAATTTGATTAGTAATAGTAT
CCCAAATTCAAGGCTATAGAAGAATTTTGTAACTTGTAGTTTTTCTCCTC
CTTGACGATTAAGATTAACAATCTCGACCATCTCAAAGTGATCGACAAAT
TTGAATCTTTAAACAATTTAACGAAATTTTATCAATAATTCTTAAATTTG
TCTTCCTCTATATATAGTTCCTGCTGCAAAGAAAAGAAAGAAATCAGACA
ACCAAATCGTTTTTAATGAGAATTTGTCCACAAAGACTGTTTCACGGTAA
TATATTGAAATAATTACGAGGATCTGATTATTACGGTACAATCGATTGTT
AATATTAGCCTATAGCAAACTCTTCTAAACCCTAAATGTTTTGTTTTAGG
AAAAGGCTGCCACAAATTTTTCATTTTTTAAAAGAATTGACCTTCCCATT
TAATTGTAGGAACAGAAATTTGTATTAAAATAACTTTAACAGTGAAAATT
GTTTTAATTTCAGGGTGTCTAGTTCATCATTCAATTCAAACTTGGGTAAA
AATTTAGTTTTCTATATGATACCTCTATGTAAATTGAAAAATTTAGATTT
AAAAACATTTCCGGAAGAATAATCCCGCTAAAGTGTGTCCAGAAAAAAGC
GGAACAGATTTAATTTAAAGAAAAATCCTCATGATTTATAGTAATATTTC
AACCTAATTACTTGATTTCTTTTCTCAACAGCCTGACAAATCATCTGGGA
AATGAACATATATTGATTGAACAAAGAATTTCCTTTTTTATTTTATTGTT
ATTATTTCAAACCCAGTGACATTAATGATTTTGAGAATCTTTTTTTCATT
TAAATTAGGTCTCGTTTTTTTTGGGACAAACTTTATACACATCGTTATCA
ATTTTATTGTCTTATTTTTTAGATATTTTCAATTTGAAACTACCAGTTTG
GGGAGGTTCACTGAATCATTCTGGTCAAACTCTTATATTTTCGGACACTT
GCTTGGTAGACAGCTGGATCACTCTTTTGAAAATTGCCTTTTTGAACTGG
CCACATCTTCGTACCCACAAGTCCTTTCCCTCCAAAATGCAACAAGTAAT
GGAACTGGTAGATGCAGACCTTTACGATGAAGTCAAACTCAAGTTTGCAG
TTTGGAATAGTATACCTCTTGATAAAGGAGCAGTTAATTTTTTTGGAAAT
GAGCGAGCAATGTTCTTAGATCATTTATTGCCGCACGATTTCACAATCGA
ATCGGTTTGTTCTAGTGAGATATGCCCTCAAAAGGATTTGACAGTACGTT
GTTCGGGCTACCCAACAATCACTGATGCCTCTCACTCGCACTTCGCTTTA
CCTCACACTCAAATCATCAATTGTTTTTTTGAGGAAGAGTCTGTTCGTCA
GTGTGGAAGAAAAATGTTGCACCCTACCAATGATGACAATACGTTTTGGC
AAACTAATACCGAAACAGGGT

Coding sequence (CDS) from alignment at sc0002232:22216..23986-

>TCONS_00039893 ID=TCONS_00039893|Name=TCONS_00039893|organism=Clytia hemisphaerica|type=CDS|length=3990bp|location=Sequence derived from alignment at sc0002232:22216..23986- (Clytia hemisphaerica)
ATATTTTCAATTTGAAACTACCAGTTTGGGGAGGTTCACTGAATCATTCT
GGTCAAACTCTTATATTTTCGGACACTTGCTTGGTAGACAGCTGGATCAC
TCTTTTGAAAATTGCCTTTTTGAACTGGCCACATCTTCGTACCCACAAGT
CCTTTCCCTCCAAAATGCAACAAGTAATGGAACTGGTAGATGCAGACCTT
TACGATGAAGTCAAACTCAAGTTTGCAGTTTGGAATAGTATACCTCTTGA
TAAAGGAGCAGTTAATTTTTTTGGAAATGAGCGAGCAATGTTCTTAGATC
ATTTATTGCCGCACGATTTCACAATCGAATCGGTTTGTTCTAGTGAGATA
TGCCCTCAAAAGGATTTGACAGTACGTTGTTCGGGCTACCCAACAATCAC
TGATGCCTCTCACTCGCACTTCGCTTTACCTCACACTCAAATCATCAATT
GTTTTTTTGAGGAAGAGTCTGTTCGTCAGTGTGGAAGAAAAATGTTGCAC
CCTACCAATGATGACAATACGTTTTGGCAAACTAATACCGAAACAGGGGG
TGTCTAGTTCATCATTCAATTCAAACTTGGTTCCTGCTGCAAAGAAAAGA
AAGAAATCAGACAACCAAATCGTTTTTAATGAGAATTTGTCCACAAAGAC
TGTTTCACGATTATTTGGGATTGAAGATGCCACCTCGAAGGAACCCTGCT
GGTCGACCAAAGTTGCGCCCTGTAGGTTTACCTTACAACAAAAGAAAGCA
TGTTTCCGATAAGAAAGCCACCTTCTTCCGAAAATGGATTGCCGAATGAT
ATTTTCAATTTGAAACTACCAGTTTGGGGAGGTTCACTGAATCATTCTGG
TCAAACTCTTATATTTTCGGACACTTGCTTGGTAGACAGCTGGATCACTC
TTTTGAAAATTGCCTTTTTGAACTGGCCACATCTTCGTACCCACAAGTCC
TTTCCCTCCAAAATGCAACAAGTAATGGAACTGGTAGATGCAGACCTTTA
CGATGAAGTCAAACTCAAGTTTGCAGTTTGGAATAGTATACCTCTTGATA
AAGGAGCAGTTAATTTTTTTGGAAATGAGCGAGCAATGTTCTTAGATCAT
TTATTGCCGCACGATTTCACAATCGAATCGGTTTGTTCTAGTGAGATATG
CCCTCAAAAGGATTTGACAGTACGTTGTTCGGGCTACCCAACAATCACTG
ATGCCTCTCACTCGCACTTCGCTTTACCTCACACTCAAATCATCAATTGT
TTTTTTGAGGAAGAGTCTGTTCGTCAGTGTGGAAGAAAAATGTTGCACCC
TACCAATGATGACAATACGTTTTGGCAAACTAATACCGAAACAGGGGGTG
TCTAGTTCATCATTCAATTCAAACTTGGTTCCTGCTGCAAAGAAAAGAAA
GAAATCAGACAACCAAATCGTTTTTAATGAGAATTTGTCCACAAAGACTG
TTTCACGATTATTTGGGATTGAAGATGCCACCTCGAAGGAACCCTGCTGG
TCGACCAAAGTTGCGCCCTGTAGGTTTACCTTACAACAAAAGAAAGCATG
TTTCCGATAAGAAAGCCACCTTCTTCCGAAAATGGATTGCCGAATGATAT
TTTCAATTTGAAACTACCAGTTTGGGGAGGTTCACTGAATCATTCTGGTC
AAACTCTTATATTTTCGGACACTTGCTTGGTAGACAGCTGGATCACTCTT
TTGAAAATTGCCTTTTTGAACTGGCCACATCTTCGTACCCACAAGTCCTT
TCCCTCCAAAATGCAACAAGTAATGGAACTGGTAGATGCAGACCTTTACG
ATGAAGTCAAACTCAAGTTTGCAGTTTGGAATAGTATACCTCTTGATAAA
GGAGCAGTTAATTTTTTTGGAAATGAGCGAGCAATGTTCTTAGATCATTT
ATTGCCGCACGATTTCACAATCGAATCGGTTTGTTCTAGTGAGATATGCC
CTCAAAAGGATTTGACAGTACGTTGTTCGGGCTACCCAACAATCACTGAT
GCCTCTCACTCGCACTTCGCTTTACCTCACACTCAAATCATCAATTGTTT
TTTTGAGGAAGAGTCTGTTCGTCAGTGTGGAAGAAAAATGTTGCACCCTA
CCAATGATGACAATACGTTTTGGCAAACTAATACCGAAACAGGGGGTGTC
TAGTTCATCATTCAATTCAAACTTGGTTCCTGCTGCAAAGAAAAGAAAGA
AATCAGACAACCAAATCGTTTTTAATGAGAATTTGTCCACAAAGACTGTT
TCACGATTATTTGGGATTGAAGATGCCACCTCGAAGGAACCCTGCTGGTC
GACCAAAGTTGCGCCCTGTAGGTTTACCTTACAACAAAAGAAAGCATGTT
TCCGATAAGAAAGCCACCTTCTTCCGAAAATGGATTGCCGAATGATATTT
TCAATTTGAAACTACCAGTTTGGGGAGGTTCACTGAATCATTCTGGTCAA
ACTCTTATATTTTCGGACACTTGCTTGGTAGACAGCTGGATCACTCTTTT
GAAAATTGCCTTTTTGAACTGGCCACATCTTCGTACCCACAAGTCCTTTC
CCTCCAAAATGCAACAAGTAATGGAACTGGTAGATGCAGACCTTTACGAT
GAAGTCAAACTCAAGTTTGCAGTTTGGAATAGTATACCTCTTGATAAAGG
AGCAGTTAATTTTTTTGGAAATGAGCGAGCAATGTTCTTAGATCATTTAT
TGCCGCACGATTTCACAATCGAATCGGTTTGTTCTAGTGAGATATGCCCT
CAAAAGGATTTGACAGTACGTTGTTCGGGCTACCCAACAATCACTGATGC
CTCTCACTCGCACTTCGCTTTACCTCACACTCAAATCATCAATTGTTTTT
TTGAGGAAGAGTCTGTTCGTCAGTGTGGAAGAAAAATGTTGCACCCTACC
AATGATGACAATACGTTTTGGCAAACTAATACCGAAACAGGGGGTGTCTA
GTTCATCATTCAATTCAAACTTGGTTCCTGCTGCAAAGAAAAGAAAGAAA
TCAGACAACCAAATCGTTTTTAATGAGAATTTGTCCACAAAGACTGTTTC
ACGATTATTTGGGATTGAAGATGCCACCTCGAAGGAACCCTGCTGGTCGA
CCAAAGTTGCGCCCTGTAGGTTTACCTTACAACAAAAGAAAGCATGTTTC
CGATAAGAAAGCCACCTTCTTCCGAAAATGGATTGCCGAATGATATTTTC
AATTTGAAACTACCAGTTTGGGGAGGTTCACTGAATCATTCTGGTCAAAC
TCTTATATTTTCGGACACTTGCTTGGTAGACAGCTGGATCACTCTTTTGA
AAATTGCCTTTTTGAACTGGCCACATCTTCGTACCCACAAGTCCTTTCCC
TCCAAAATGCAACAAGTAATGGAACTGGTAGATGCAGACCTTTACGATGA
AGTCAAACTCAAGTTTGCAGTTTGGAATAGTATACCTCTTGATAAAGGAG
CAGTTAATTTTTTTGGAAATGAGCGAGCAATGTTCTTAGATCATTTATTG
CCGCACGATTTCACAATCGAATCGGTTTGTTCTAGTGAGATATGCCCTCA
AAAGGATTTGACAGTACGTTGTTCGGGCTACCCAACAATCACTGATGCCT
CTCACTCGCACTTCGCTTTACCTCACACTCAAATCATCAATTGTTTTTTT
GAGGAAGAGTCTGTTCGTCAGTGTGGAAGAAAAATGTTGCACCCTACCAA
TGATGACAATACGTTTTGGCAAACTAATACCGAAACAGGGGGTGTCTAGT
TCATCATTCAATTCAAACTTGGTTCCTGCTGCAAAGAAAAGAAAGAAATC
AGACAACCAAATCGTTTTTAATGAGAATTTGTCCACAAAGACTGTTTCAC
GATTATTTGGGATTGAAGATGCCACCTCGAAGGAACCCTGCTGGTCGACC
AAAGTTGCGCCCTGTAGGTTTACCTTACAACAAAAGAAAGCATGTTTCCG
ATAAGAAAGCCACCTTCTTCCGAAAATGGATTGCCGAATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024145XLOC_024145Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039893-exon-sc0002232-1575043694:23955..23986TCONS_00039893-exon-sc0002232-1575043694:23955..23986Clytia hemisphaericaexon
TCONS_00039893-exon-sc0002232-1575043694:23755..23862TCONS_00039893-exon-sc0002232-1575043694:23755..23862Clytia hemisphaericaexon
TCONS_00039893-exon-sc0002232-1575043694:23391..23469TCONS_00039893-exon-sc0002232-1575043694:23391..23469Clytia hemisphaericaexon
TCONS_00039893-exon-sc0002232-1575043694:23142..23173TCONS_00039893-exon-sc0002232-1575043694:23142..23173Clytia hemisphaericaexon
TCONS_00039893-exon-sc0002232-1575043694:22216..22764TCONS_00039893-exon-sc0002232-1575043694:22216..22764Clytia hemisphaericaexon
TCONS_00039893-exon-sc0002232-1510915933:23955..23986TCONS_00039893-exon-sc0002232-1510915933:23955..23986Clytia hemisphaericaexon
TCONS_00039893-exon-sc0002232-1510915933:23755..23862TCONS_00039893-exon-sc0002232-1510915933:23755..23862Clytia hemisphaericaexon
TCONS_00039893-exon-sc0002232-1510915933:23391..23469TCONS_00039893-exon-sc0002232-1510915933:23391..23469Clytia hemisphaericaexon
TCONS_00039893-exon-sc0002232-1510915933:23142..23173TCONS_00039893-exon-sc0002232-1510915933:23142..23173Clytia hemisphaericaexon
TCONS_00039893-exon-sc0002232-1510915933:22216..22764TCONS_00039893-exon-sc0002232-1510915933:22216..22764Clytia hemisphaericaexon
TCONS_00039893-exon-sc0002232-1491911889:23955..23986TCONS_00039893-exon-sc0002232-1491911889:23955..23986Clytia hemisphaericaexon
TCONS_00039893-exon-sc0002232-1491911889:23755..23862TCONS_00039893-exon-sc0002232-1491911889:23755..23862Clytia hemisphaericaexon
TCONS_00039893-exon-sc0002232-1491911889:23391..23469TCONS_00039893-exon-sc0002232-1491911889:23391..23469Clytia hemisphaericaexon
TCONS_00039893-exon-sc0002232-1491911889:23142..23173TCONS_00039893-exon-sc0002232-1491911889:23142..23173Clytia hemisphaericaexon
TCONS_00039893-exon-sc0002232-1491911889:22216..22764TCONS_00039893-exon-sc0002232-1491911889:22216..22764Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039893-proteinTCONS_00039893-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002232supercontigsc0002232:22216..23986 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	7.19746	7.22649	6.81185	9.25751	4.35298	4.28771	4.66532	3.64746	4.29663	3.46821	0	0	0.31545	0.368733	0.382879	0	0.657758	0.453914	0.275317	0.198132	2.96037	5.31564	0	0	0.421732	0.814265
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039893 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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