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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00039889 ID=TCONS_00039889|Name=TCONS_00039889|organism=Clytia hemisphaerica|type=transcript|length=2321bp
GTTTTAATAAATAATAAACAAACATGGAAGAGAGTATGAATGAGGTTGTT
CGATTCTTAAAAAGGAGACAAATGAGTGAAGTAACAATATCAAACTTCAA
AAAAGAGAAGATGGACGAAACAGCGATAAACCAAGCAGCCGATGAAGTTT
TATCAAACATGGGTATTCGAGCAAGAGGTGACTTGCTTGCATTAAGAGCC
TTTTGTTTGCCTAAAATGGTTGAAGATAATGAAGAAAAACTTTACCAGGA
AGTTAAAAGAGGTCAAGGATCAACAAAAAAGACAAAATCAAAAAGAGAAA
GGTCAATCAGCATAGGCTGGATACATTATGATAGGAAGGCAGGGCGGTAT
GCTGGTGTCCGATCCAAACGTGGAGGAGGTTTACGATCAGTGAAAATGCA
TGATTCATCTACAAGGCAAGATATATTAGGAGAAGCCGAAAAGATCTTCT
TTCCAAAGGGAAAATCACAAGTTGGTCAGCTTGCTCTAATGATAACCTTA
TTGGGCAAATTCGATGAAACTCCATTGCCATCTACCATTGAAGTTGATGG
GAAAGAAGTTCAATTTAGTTTGGGTGGTTACCTGCAAGAAAATCGTTTGA
CAAAGGCTAAGTTTTATCTCATGACTAAATCCTTATCCTTTCTGGATAAG
GTTAATGAACTATCGTCAGACGATGATTTTGATTTGCCTCCTGCTCCAAT
GAATAATTCATTGTCACCAAAAGAAACAGACGAAAATACAGTCCCATTAC
AAACATTGCAACAGAATAATCAGGACAGCTTACTTATTGGATCAACCCAA
TCAAGGACACAACTTCAAAATGAGATTGAAAAAGCATTTAAAGAAAGTGA
ATATGCTGATAAAAGAAAAGCCGATGTGAAAAAACACCAAGCTGAAGAAA
ATGAACGTCTAGCTGAAGAGAAAAAACGCCAAGCTGATGAAAACGAACGT
CTAGCAGAAACGCGAAAACAAGAACAAGAAAACTTACGTCAATCCAGGCT
TTCTCGTGTAAAAGCAGAACCAAATCTATCGGAAGACCACACTGTGATTT
CGGTGAGGCATCCAAAGCTTGGGACTCGTCGAAGAGTGTTTCNTCTCGTG
TAAAAGCAGAACCAAATCTATCGGAAGACCACACTGTGATTTCGGTGAGG
CATCCAAAGCTTGGGACTCGTCGAAGAGTGTTTCTTGACAAGGATAACTT
TTCGTGTGTTTATGACTGGGTTGGATCCCTGGATATTgttcctaaatatt
ttcaactgatCCACCCTTCCGGGCAGCTTTTGCAACCTTGGAAAACTGTC
TCTGCTTTTGGGAAAGTAGTGTTAAATATGGAAGCATGTGATAACGCTTT
AGAACTTGAACCAGAAGGAGAAGTTGCTTTATCTGGATTTAGTGTCCAAG
AAGATCTGTTTGCGTATGCTGACGAAGAGATTGCAGACATAAATCAAAGA
CTACCGGTAAATGATATCGAAGAAGAAACAATAGATTGCCAGTGTGATAT
AGTTGAATACCTGAAAAAACAGCAAACTACCGAGCATGGCGATGTCAATG
CAACACTTGTGGCACACAGAAGACCAAAATCCTTTTGGAATGTCTTTTTC
AAACAGAACGTTGATCTTAAACGGCCTTTTCGAGTCATTTGGGCCGGAGA
AACATCTAGTGATGACGGAGGCCCGTTCCGAGAGTTTTTATTACGATGTA
TGGAACAATTTCAACTTTTAAATTCATACTTTTTCGGTGAAAAATATAAG
CTTTTGTTTACTGCTTTGACTGACGCTGTCATAAAAAAACATTACTTTGT
TCTGGGTCAATTGAGTGCATTATCAATACTGCATATCGGAAGAGGACCCC
AATGCTTACACCCTGGTATTGTTGATCGGATTCTACGTTCGCCAAACCCT
GTACTGTTAGATGATATCCAGAACGGGGAATATGAAGCAAATGTCACATC
GATCAAAAATGGCGAAACAGATTCCCTCTTAGATGCTGGCATCATGCCCT
CAAAAGATCGATCGAAAGATTTACAGGACTATTGTGAATATTTTTGTGTC
ATCTCCAAAGCTGCAGCAATTGAACAATTCCGTGAAGGTATGCTACGTAT
ATTTCATTTTAAGTTTAAATTTCGAAAATTTTCTACGTAATTTGAAAGGG
CACAGGGAAGTTCTCAGACTTCCTCGTAATAATAATAACAAATATTTTAT
GTGGCATGCTTCGAAAAATTTAACAGCTTTTAGGCAGCTGAGGAATTGTT
TCCACGAAGGGCCACAAACAGAACAGACAGACCTCTTACACAGCAAATGA
AAATTATATGTCTTCGTTTTA Run BLAST on NCBI transcript from alignment at sc0002231:22175..28176- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00039889 ID=TCONS_00039889|Name=TCONS_00039889|organism=Clytia hemisphaerica|type=transcript|length=6002bp|location=Sequence derived from alignment at sc0002231:22175..28176- (Clytia hemisphaerica)
GTTTTAATAAATAATAAACAAACATGGAAGAGAGTATGAATGAGGTAAGA
AATAATTTTAGTCCTCTCCCTATCTCTCTTTGAATATAACATTTCTTCAA
ATATAAAAATAATGGAAGCTTTTTCAAAGATTTTCCAACAAGTACTTTTC
ATTTTAATAATATATTTTGTATATACCGTTGAAAATATACTCAGGAACAC
TACTTTTTTCACAGAAAATAATTTTTGTTATTTATGAAAATGATATATTT
GATAACAATTAGAAGAAAATGGACATCTTAAATCTCTCCAAAAGTATGTA
AACACTTTACATGTTAAAACAATATCTTGACACACAGGCATCACCAATTT
AAAAGATATACACCCTTGGAACTATAATTTGAAGCAGATTCTTTTGAGAG
TTTTCAAAAAGAGTTTTAAGCCCCTCAAAGTAGGCCTAAAACGACCAAAA
ATGGGAAAAGTAGGTCTTCTTTGAGAGGCTATAACTTTTATCAACAAGAA
AAGTTTCATTTTTTCAATTTATGAATTATTTTGAATTTTGAAAGTAAGCT
TCTTTTAATGATCTTTCCAACAGTTAATAACTTTTAAATGTGATGCTTGT
GTGTCAAGATGTTGTTAAAAATGTAAAGCGTCCACATAATTTTGGGATAG
ACCTTAAAATATGATGATTTCAAATATATTTGATTTTGTGGCAGATTTTA
CACTTTCAAATATTTGGACGTTCTGGGCTTCAACATGTAAAACATTCCCC
ATATATGACAAAAGTAATTATTTGGAATCATATTCTAGTCAGGTCAAGCA
GTTAGTATCACACATTGTTTAATAATTCAAACATCTTTCAGGTTGTTCGA
TTCTTAAAAAGGAGACAAATGAGTGAAGTAACAATATCAAACTTCAAAAA
AGAGAAGGTAAGTTTTGTATTTTTTATTTTGCTACCAACAGCCAGGGAAA
ACCTGGACAACGAAGAGTTAAATAATTTGTAAATTGTCTCCCCTGATTAA
CCTCATTCTCCAATACAGCCCCCAAAACCCTGGGTTCAGCTGGGTCCATA
CATGTCAATATTATGGCTCGACTTATTAAAATTCAGTGTATATTTAAAAA
ATCCACAGAAGTTTGTGGGGATAAATTACTTCATTTCAATGTTTTTAATA
ATTTTAAATATGAAATAGCTAGAATGTAATATGCTTTCAACTTCAGTTGA
GCTAGAATCTTAAAATGTCTGTCTGTGAGTCTGTCTGTCTGTCCGTGTAC
AAAACTTTGGGGCAGGGTGAATGCTTCATAGATTGTCGGATTTGGATGAA
ATTTGGTACACTTTGGTATTTTGGGGTGTTTTTTTTTCATTTTTTCAAAA
ATTTCATGTTCTCACAATCAGCCAAAATGACTGTAAATCTTTGGGTTACA
ATTTTATGAAATCTGAGAAAAATCTTTTTTATTTTTCAAATTTTTGATTA
ACCCTACTTGGACCGGGCTTTTGTCGGGTATGTAAAGGACCGGGTGGGGG
CAAAAATTGCCCCCCCCTCAGAACTCCAGATAGAATTGTCCTTTTTGAAT
GAAATTTGGCACAGAGAATCCCCATCACCAATAAAACAAAATGGCAAAAA
AAAGTTTTCGAAAAGTCACGTGATGACGTCACATCAAAATTTGGACCAAA
AAGACTTATCGCCTTGCCCGAAAAATCGACCCCTCAAACCAAGAGGATTT
TGGGGAAAAAAATTATGCAGTCTCATTNTTGCCCGAAAAATCGACCCCTC
AAACCAAGAGGATTTTGGGGAAAAAAATTATGCAGTCTCATTGTATATCT
AAATACGAATTACTGTGCAATATTTCAGGTCAATTTGACCATAGGTTCAA
TTTATATGGCCGTTTGGAAATCCAAAATGAGACCGCTGCGGCTGCGGTGG
GAAAAGTTTTTGGCTGATTTTTTTTTATTTTGGTGTAGAATAGAATTTCA
GAAATTGTCATAAAAATTCAGGGCCCTAAACCCATGTCTCAAAATGCACC
GGGGGAAAAAGTGACAGGGGGGGGCAATTTTTGCCCCCACCCCCCAGGCC
AAGTAGGGTAAGTATAATCGTTGTTAAACTTTTTATGAATGCTGATGTTT
TATGACATCGTTAGAATATCCCTAACTTTATCTCTGCGAATTTGGTATAT
TTATGCTTTCCTTAAAAGTTACTGCACGTTGACAGTAGTTATGTAATGAA
TGGTATACATTAATATGTGGTTTTCCTTTTTCAGATGGACGAAACAGCGA
TAAACCAAGCAGCCGATGAAGTTTTATCAAACATGGGTATTCGAGCAAGA
GGTGACTTGCTTGCATTAAGAGCCTTTTGTTTGCCTAAAATGGTTGAAGA
TAATGAAGAAAAACTTTACCAGGAAGTTAAAAGAGGTCAAGGATCAACAA
AAAAGACAAAATCAAAAAGAGAAAGGTCAATCAGCATAGGCTGGATACAT
TATGATAGGAAGGCAGGGCGGTATGCTGGTGTCCGATCCAAACGTGGAGG
AGGTTTACGATCAGTGAAAATGCATGATTCATCTACAAGGCAAGATATAT
TAGGAGAAGCCGAAAAGATCTTCTTTCCAAAGGGAAAATCACAAGTTGGT
CAGCTTGCTCTAATGATAACCTTATTGGGCAAATTCGATGAAACTCCATT
GCCATCTACCATTGAAGTTGATGGGAAAGAAGTTCAATTTAGTTTGGGTG
GTTACCTGCAAGAAAATCGTTTGACAAAGGCTAAGTTTTATCTCATGACT
AAATCCTTATCCTTTCTGGATAAGGTTAATGAACTATCGTCAGACGATGA
TTTTGATTTGCCTCCTGCTCCAATGAATAATTCATTGTCACCAAAAGAAA
CAGACGAAAATACAGTCCCATTACAAACATTGCAACAGAATAATCAGGTT
AGCTAATTTTCTTTCCTTTTAAGTACCAGTGAATATTTCAAAAGCACATT
CAATGTTGTGGTGAAGGGTGATTTTCCAGGGGTATATACGTACTTTTTTG
AAGAGAGGGGTATAAAAGCTCTTTGACCACTTTTCACACTTTGACCTGGA
CAGCCTGGGGGTACTTGATCTGAAAGCCATTGAATGTTCAGAATAAAATT
TGGCTTTAAAAATCAAACCCTTAAAGTGCAGACCCTTTCAGTTTATAGTT
GACAAAGTTTGTTGCTTGTTAGATATAAACAACTTTCAATTTTCTGCAAG
AATTACTCATTTTCTTACCCTTATTAAAGTACAGCAAAGGTCCTTGATCA
GTTCTACACATGCAGCTAAGGTAGCTTACCTTGAGTGCCTTCAAACTATT
ATATCTTTTGAAATGAGCTATTTTTTCGTAAACAGCCCCCAAAATTTAAA
AATTTAGGTTTTAATTTTTTGATTCTTTTTAATTTTTCTTACCCCCCCCC
CAAAAAAAAAAATATGAGAAGAAGAATAGCTTAGGGAATGAGTTTTTTTC
TCAATTTAAGTTGAGCTGGATCTGACAATGTCAATCTGTCTACTTGTTAG
GTGCACATAAATCCTTGGGGGAGTCTGGAGAGGCCAAAAATAGTTTGAAA
ACTGGGCTGGGTACACTATTATTTTTCTTTTTTTGAAAATTTTTATTTGG
TCTGTTTTGGGAGACTGGGTTGCCCCCTTGCCTAAATTTGACCACAGATA
AATAAGTCATTCATTGCTGCTGCTTTGAATTGTTACTATCCCTCTTTGTG
ACTTTATGTGACAATAAAATAAATGTGATAAAACCATGTAAGTCGCAGTA
ATGTCATCAACACTGCATTATCTTTTTATATCCAGGAAATCAAGATTTAG
TCATAGTTTCCTCTCCCCCTCCCTTTCTGCAGGGGGGGGGATTTTTTTCC
CTAAATTTTCAAAAAGAGGGAGGGGAAGGAAAAAATTGAAATCCTGGGGG
GGGATTTCCTATATGGGCGAAGTTTTTTTGCGGGGGGGGGGAGGATTTTT
CTATTTTGCAAATTTGTGGAAAAATAAGATGCCAGTTTATGACTGATTTT
TAGCTAGTATTTATAGATAAGGTTAATACAACTTTGATCAAGACTACTTA
AAATCTCTTGTCATAAAGCTTTTAAATAATATTTTGGAAAAAGTCCTCTT
CAGTAAGAGCGTGAGTCAAGGGTCAATATGAAAAATTGTGGGGGCCGAAA
AAAAGGGGGGAGGTAAGATTTTAGCACATTTTGGGGGGATTCCACAAAAG
GGAGGGGGGAAACATTTTTTTTATTTCCAGGGGGGGATTTGTTGATCGGG
CAATCGATTTTCTCAGGGGGGGAACTGACCCAGGAGGAAACTATGTTTAG
CCTTTTGGAGGCAAAAACGTCTAAAACAAAACTATTTAGAATTTGCTTTG
AAGTCTTCTGGTTTGCTCGTACTGGTCTAGTAAGCCATGATCTTCAAACC
TAAAATATACCCATATACTCGGAATTCATAAACTTTTCTTTTACTTATTT
TTAGGACAGCTTACTTATTGGATCAACCCAATCAAGGACACAACTTCAAA
ATGAGATTGAAAAAGCATTTAAAGAAAGTGAATATGCTGATAAAAGAAAA
GCCGATGTGAAAAAACACCAAGCTGAAGAAAATGAACGTCTAGCTGAAGA
GAAAAAACGCCAAGCTGATGAAAACGAACGTCTAGCAGAAACGCGAAAAC
AAGAACAAGAAAACTTACGTCAATCCAGGCTTTCTCGTGTAAAAGCAGAA
CCAAATCTATCGGAAGACCACACTGTGATTTCGGTGAGGCATCCAAAGCT
TGGGACTCGTCGAAGAGTGTTTCNTCTCGTGTAAAAGCAGAACCAAATCT
ATCGGAAGACCACACTGTGATTTCGGTGAGGCATCCAAAGCTTGGGACTC
GTCGAAGAGTGTTTCTTGACAAGGATAACTTTTCGTGTGTTTATGACTGG
GTTGGATCCCTGGATATTGTTCCTAAATATTTTCAACTGATCCACCCTTC
CGGGCAGCTTTTGCAACCTTGGAAAACTGTCTCTGCTTTTGGGAAAGTAG
TGTTAAATATGGAAGCATGTGATAACGCTTTAGAACTTGAACCAGAAGGA
GAAGTTGCTTTATCTGGATTTAGTGTCCAAGAAGATCTGTTTGCGTATGC
TGACGAAGAGATTGCAGACATAAATCAAAGACTACCGGTAAATGATATCG
AAGAAGAAACAATAGATTGCCAGTGTGATATAGTTGAATACCTGAAAAAA
CAGCAAACTACCGAGCATGGCGATGTCAATGCAACACTTGTGGCACACAG
AAGACCAAAATCCTTTTGGAATGTCTTTTTCAAACAGAACGTTGATCTTA
AACGGCCTTTTCGAGTCATTTGGGCCGGAGAAACATCTAGTGATGACGGA
GGCCCGTTCCGAGAGTTTTTATTACGATGTATGGAACAATTTCAACTTTT
AAATTCATACTTTTTCGGTGAAAAATATAAGCTTTTGTTTACTGCTTTGA
CTGACGCTGTCATAAAAAAACATTACTTTGTTCTGGGTCAATTGAGTGCA
TTATCAATACTGCATATCGGAAGAGGACCCCAATGCTTACACCCTGGTAT
TGTTGATCGGATTCTACGTTCGCCAAACCCTGTACTGTTAGATGATATCC
AGAACGGGGAATATGAAGCAAATGTCACATCGATCAAAAATGGCGAAACA
GATTCCCTCTTAGATGCTGGCATCATGCCCTCAAAAGATCGATCGAAAGA
TTTACAGGACTATTGTGAATATTTTTGTGTCATCTCCAAAGCTGCAGCAA
TTGAACAATTCCGTGAAGGTATGCTACGTATATTTCATTTTAAGTTTAAA
TTTCGAAAATTTTCTACGTAATTTGAAAGGGCACAGGGAAGTTCTCAGAC
TTCCTCGTAATAATAATAACAAATATTTTATGTGGCATGCTTCGAAAAAT
TTAACAGCTTTTAGGCAGCTGAGGAATTGTTTCCACGAAGGGCCACAAAC
AGAACAGACAGACCTCTTACACAGCAAATGAAAATTATATGTCTTCGTTT
TA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00039889-exon-sc0002231-1575043694:28133..28176 | TCONS_00039889-exon-sc0002231-1575043694:28133..28176 | Clytia hemisphaerica | exon |
| TCONS_00039889-exon-sc0002231-1575043694:27270..27335 | TCONS_00039889-exon-sc0002231-1575043694:27270..27335 | Clytia hemisphaerica | exon |
| TCONS_00039889-exon-sc0002231-1575043694:25280..25942 | TCONS_00039889-exon-sc0002231-1575043694:25280..25942 | Clytia hemisphaerica | exon |
| TCONS_00039889-exon-sc0002231-1575043694:22175..23722 | TCONS_00039889-exon-sc0002231-1575043694:22175..23722 | Clytia hemisphaerica | exon |
| TCONS_00039889-exon-sc0002231-1510915933:28133..28176 | TCONS_00039889-exon-sc0002231-1510915933:28133..28176 | Clytia hemisphaerica | exon |
| TCONS_00039889-exon-sc0002231-1510915933:27270..27335 | TCONS_00039889-exon-sc0002231-1510915933:27270..27335 | Clytia hemisphaerica | exon |
| TCONS_00039889-exon-sc0002231-1510915933:25280..25942 | TCONS_00039889-exon-sc0002231-1510915933:25280..25942 | Clytia hemisphaerica | exon |
| TCONS_00039889-exon-sc0002231-1510915933:22175..23722 | TCONS_00039889-exon-sc0002231-1510915933:22175..23722 | Clytia hemisphaerica | exon |
| TCONS_00039889-exon-sc0002231-1491911889:28133..28176 | TCONS_00039889-exon-sc0002231-1491911889:28133..28176 | Clytia hemisphaerica | exon |
| TCONS_00039889-exon-sc0002231-1491911889:27270..27335 | TCONS_00039889-exon-sc0002231-1491911889:27270..27335 | Clytia hemisphaerica | exon |
| TCONS_00039889-exon-sc0002231-1491911889:25280..25942 | TCONS_00039889-exon-sc0002231-1491911889:25280..25942 | Clytia hemisphaerica | exon |
| TCONS_00039889-exon-sc0002231-1491911889:22175..23722 | TCONS_00039889-exon-sc0002231-1491911889:22175..23722 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002231 | supercontig | sc0002231:22175..28176 - |
Blast
The following BLAST results are available for this feature:
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