TCONS_00039885 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039885
Unique NameTCONS_00039885
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length291

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039885 ID=TCONS_00039885|Name=TCONS_00039885|organism=Clytia hemisphaerica|type=transcript|length=291bp
TAGACACTGATTACTGGATACCCCTTTTATTGCTGAACCTTTAACTGTTT
TACAGGACTTGATTCGTTTTGGACACTGATTATTGGATAACCCCTTATAC
TGCTGAATCTATAACTGTTTTACTGGACTGGATTTGTTTTGGACACTGAT
TACTGGATAACCCCTTATACTGCTGAATCTATAATCGTTTTACTGGACTT
GATTTGTTTTGGACACTGATTGCTGGATAACCCCTCATACTGCTGAATCT
ATAACTGTTTTACTGGACTTGATTTGTTTTGGACACTGATA
Run BLAST on NCBI

transcript from alignment at sc0002229:26663..26953

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039885 ID=TCONS_00039885|Name=TCONS_00039885|organism=Clytia hemisphaerica|type=transcript|length=291bp|location=Sequence derived from alignment at sc0002229:26663..26953 (Clytia hemisphaerica)
TATCAGTGTCCAAAACAAATCAAGTCCAGTAAAACAGTTATAGATTCAGC
AGTATGAGGGGTTATCCAGCAATCAGTGTCCAAAACAAATCAAGTCCAGT
AAAACGATTATAGATTCAGCAGTATAAGGGGTTATCCAGTAATCAGTGTC
CAAAACAAATCCAGTCCAGTAAAACAGTTATAGATTCAGCAGTATAAGGG
GTTATCCAATAATCAGTGTCCAAAACGAATCAAGTCCTGTAAAACAGTTA
AAGGTTCAGCAATAAAAGGGGTATCCAGTAATCAGTGTCTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024139XLOC_024139Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039885-exon-sc0002229-1491911889:26663..26953TCONS_00039885-exon-sc0002229-1491911889:26663..26953Clytia hemisphaericaexon
TCONS_00039885-exon-sc0002229-1510915933:26663..26953TCONS_00039885-exon-sc0002229-1510915933:26663..26953Clytia hemisphaericaexon
TCONS_00039885-exon-sc0002229-1575043694:26663..26953TCONS_00039885-exon-sc0002229-1575043694:26663..26953Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002229supercontigsc0002229:26663..26953 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.01756	1.68148	0.488091	0	9.8827	3.21565	7.20487	6.74511	0.726525	1.79984	0	2.00968	1.43349	0.595476	0.734344	0.525376	0.97083	0.33169	2.74948	2.87714	1.25038	6.70879	0.988535	1.34808	2.77699	3.71759	4.13767	1.8925	5.26311	3.41236
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039885 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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