TCONS_00039884 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039884
Unique NameTCONS_00039884
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length551

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039884 ID=TCONS_00039884|Name=TCONS_00039884|organism=Clytia hemisphaerica|type=transcript|length=551bp
ACTGTCGCTAGTGTTGTGTTGACCAACCTTTTTCAGACCTTGCGTTATGG
aaggaaattttcattttatctcTTGCAAATATAAAGGGGTCACTACCCCT
CCCTTACCCTAGTTTCTGAAGCACAGGAGTTGCGGGAGAAAAATGGAATT
GCAGGATTGGTGTATTAGGAAATTCGAACTTGACTTGTCTGCGAGTGCGA
TTATTTACGTGGTGAACCCCGTATaaagttgaagttggtttgatattcta
cgtttgacgtttgatattCGCTTGATATttgtttgatattctcaaatttg
attttaagtgTGGCGCTTACAAAGAGGGAGGCGCTTAATAGAGGGCAGca
cttattttgaattttagaaattCGTTTTCCTGAGtttattccaaaaattt
gtATCACGCTTGGGTTCCGAAGAGGATTTTTCTGCGGTTTTAACTATGTT
TTAAGGCTATAATTATAAGTAGTTAGCGATTGCATTTCCAATTGATTCAC
TTGTTTGTAGAGCTCTCCATTGCAGTTTATCctttaaatttctttatttt
t
Run BLAST on NCBI

transcript from alignment at sc0002229:16436..16986

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039884 ID=TCONS_00039884|Name=TCONS_00039884|organism=Clytia hemisphaerica|type=transcript|length=551bp|location=Sequence derived from alignment at sc0002229:16436..16986 (Clytia hemisphaerica)
aaaaataaagaaatttaaagGATAAACTGCAATGGAGAGCTCTACAAACA
AGTGAATCAATTGGAAATGCAATCGCTAACTACTTATAATTATAGCCTTA
AAACATAGTTAAAACCGCAGAAAAATCCTCTTCGGAACCCAAGCGTGATa
caaatttttggaataaaCTCAGGAAAACGaatttctaaaattcaaaataa
gtgCTGCCCTCTATTAAGCGCCTCCCTCTTTGTAAGCGCCAcacttaaaa
tcaaatttgagaatatcaaacaaATATCAAGCGaatatcaaacgtcaaac
gtagaatatcaaaccaacttcaactttATACGGGGTTCACCACGTAAATA
ATCGCACTCGCAGACAAGTCAAGTTCGAATTTCCTAATACACCAATCCTG
CAATTCCATTTTTCTCCCGCAACTCCTGTGCTTCAGAAACTAGGGTAAGG
GAGGGGTAGTGACCCCTTTATATTTGCAAgagataaaatgaaaatttcct
tCCATAACGCAAGGTCTGAAAAAGGTTGGTCAACACAACACTAGCGACAG
T
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024138XLOC_024138Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039884-exon-sc0002229-1491911889:16436..16986TCONS_00039884-exon-sc0002229-1491911889:16436..16986Clytia hemisphaericaexon
TCONS_00039884-exon-sc0002229-1510915933:16436..16986TCONS_00039884-exon-sc0002229-1510915933:16436..16986Clytia hemisphaericaexon
TCONS_00039884-exon-sc0002229-1575043694:16436..16986TCONS_00039884-exon-sc0002229-1575043694:16436..16986Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002229supercontigsc0002229:16436..16986 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.337696	0.303477	1.31443	2.03118	0.444869	0.110546	0.400107	0.249717	0.0874164	0.108279	1.05099	0.690877	0.206975	0.227094	0.294524	0.252855	0	0.0798186	0	0	0.318228	0.16089	0.118942	0	0.111377	0.198802	0	0.151805	0.230278	0.461866
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039884 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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