TCONS_00039869 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039869
Unique NameTCONS_00039869
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length156

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039869 ID=TCONS_00039869|Name=TCONS_00039869|organism=Clytia hemisphaerica|type=transcript|length=156bp
CAACCTTTTCAATAGCTTTACCATCAACGTCGGTACCATTTCTCTGACTA
AGTAGGATTCTATCACGTGTCTTTACTGTGGATAGGAAGTAGTTATTGAT
AATGATGCAAAATCCACGTGGCTCTGACGTCATTTGATAAAAATCGGCGG
GATTCT
Run BLAST on NCBI

transcript from alignment at sc0002223:8912..9067

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039869 ID=TCONS_00039869|Name=TCONS_00039869|organism=Clytia hemisphaerica|type=transcript|length=156bp|location=Sequence derived from alignment at sc0002223:8912..9067 (Clytia hemisphaerica)
AGAATCCCGCCGATTTTTATCAAATGACGTCAGAGCCACGTGGATTTTGC
ATCATTATCAATAACTACTTCCTATCCACAGTAAAGACACGTGATAGAAT
CCTACTTAGTCAGAGAAATGGTACCGACGTTGATGGTAAAGCTATTGAAA
AGGTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024130XLOC_024130Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039869-exon-sc0002223-1491911889:8912..9067TCONS_00039869-exon-sc0002223-1491911889:8912..9067Clytia hemisphaericaexon
TCONS_00039869-exon-sc0002223-1510915933:8912..9067TCONS_00039869-exon-sc0002223-1510915933:8912..9067Clytia hemisphaericaexon
TCONS_00039869-exon-sc0002223-1575043694:8912..9067TCONS_00039869-exon-sc0002223-1575043694:8912..9067Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002223supercontigsc0002223:8912..9067 .
Expression
No biomaterial libraries express this feature.
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039869 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top