TCONS_00039868 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039868
Unique NameTCONS_00039868
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length637

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039868 ID=TCONS_00039868|Name=TCONS_00039868|organism=Clytia hemisphaerica|type=transcript|length=637bp
AATTTCGAATCACTATcaataatttcatcaaaatcgttttcaatttcttt
caccTGTTTGCGAAAGTCGACTTTCCCGTCAAAATAATTTGGGTCGGATA
AAAGTTTAATGACTGTTTTGATTGCCATGTGTATAATCTTAAACAGCTCA
TCTTGTCCACCATTGATGTCTTTAAAATTATTACCAAGAGATTTGCTGCG
ATTACAAACAAAGTGTTCACATTCTTCGCGAGTTACATGGAANCATTGAT
GTCTTTAAAATTATTACCAAGAGATTTGCTGCGATTACAAACAAAGTGTT
CACATTCTTCGCGAGTTacgtggactaaatttcgccATTTCAACATAACC
TCAAGGCTTGCTTTTAGATTAGCCATATAACAAAGATTCGATTTTTCCAT
TGTAATAATATCACAATTCTTATCTTTGCCACTCAAATAAAACTCtttga
aatcttcaaatttATCACGGCTGCATTTGACGCATTTCCCACATAATTTG
CAGCATAATTTACCGCAGTCTGCCTTGTCGCAATTACACAATGGGCATCT
CTTCATTTTATGTTTACAAGAGTTACAACATTTAGCACTATGGTGCACAC
CACATGTCCCTTTGTctctttcaaaaagaaaatcagt
Run BLAST on NCBI

protein sequence of TCONS_00039868-protein

>TCONS_00039868-protein ID=TCONS_00039868-protein|Name=TCONS_00039868-protein|organism=Clytia hemisphaerica|type=polypeptide|length=134bp
TDFLFERDKGTCGVHHSAKCCNSCKHKMKRCPLCNCDKADCGKLCCKLCG
KCVKCSRDKFEDFKEFYLSGKDKNCDIITMEKSNLCYMANLKASLEVMLK
WRNLVHVTREECEHFVCNRSKSLGNNFKDINXSM
Run BLAST on NCBI

transcript from alignment at sc0002223:7205..7841

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039868 ID=TCONS_00039868|Name=TCONS_00039868|organism=Clytia hemisphaerica|type=transcript|length=637bp|location=Sequence derived from alignment at sc0002223:7205..7841 (Clytia hemisphaerica)
actgattttctttttgaaagagACAAAGGGACATGTGGTGTGCACCATAG
TGCTAAATGTTGTAACTCTTGTAAACATAAAATGAAGAGATGCCCATTGT
GTAATTGCGACAAGGCAGACTGCGGTAAATTATGCTGCAAATTATGTGGG
AAATGCGTCAAATGCAGCCGTGATaaatttgaagatttcaaaGAGTTTTA
TTTGAGTGGCAAAGATAAGAATTGTGATATTATTACAATGGAAAAATCGA
ATCTTTGTTATATGGCTAATCTAAAAGCAAGCCTTGAGGTTATGTTGAAA
TggcgaaatttagtccacgtAACTCGCGAAGAATGTGAACACTTTGTTTG
TAATCGCAGCAAATCTCTTGGTAATAATTTTAAAGACATCAATGNTTCCA
TGTAACTCGCGAAGAATGTGAACACTTTGTTTGTAATCGCAGCAAATCTC
TTGGTAATAATTTTAAAGACATCAATGGTGGACAAGATGAGCTGTTTAAG
ATTATACACATGGCAATCAAAACAGTCATTAAACTTTTATCCGACCCAAA
TTATTTTGACGGGAAAGTCGACTTTCGCAAACAggtgaaagaaattgaaa
acgattttgatgaaattattgATAGTGATTCGAAATT

Coding sequence (CDS) from alignment at sc0002223:7205..7841

>TCONS_00039868 ID=TCONS_00039868|Name=TCONS_00039868|organism=Clytia hemisphaerica|type=CDS|length=405bp|location=Sequence derived from alignment at sc0002223:7205..7841 (Clytia hemisphaerica)
actgattttctttttgaaagagACAAAGGGACATGTGGTGTGCACCATAG
TGCTAAATGTTGTAACTCTTGTAAACATAAAATGAAGAGATGCCCATTGT
GTAATTGCGACAAGGCAGACTGCGGTAAATTATGCTGCAAATTATGTGGG
AAATGCGTCAAATGCAGCCGTGATaaatttgaagatttcaaaGAGTTTTA
TTTGAGTGGCAAAGATAAGAATTGTGATATTATTACAATGGAAAAATCGA
ATCTTTGTTATATGGCTAATCTAAAAGCAAGCCTTGAGGTTATGTTGAAA
TggcgaaatttagtccacgtAACTCGCGAAGAATGTGAACACTTTGTTTG
TAATCGCAGCAAATCTCTTGGTAATAATTTTAAAGACATCAATGNTTCCA
TGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024129XLOC_024129Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039868-exon-sc0002223-1491911889:7205..7841TCONS_00039868-exon-sc0002223-1491911889:7205..7841Clytia hemisphaericaexon
TCONS_00039868-exon-sc0002223-1510915933:7205..7841TCONS_00039868-exon-sc0002223-1510915933:7205..7841Clytia hemisphaericaexon
TCONS_00039868-exon-sc0002223-1575043694:7205..7841TCONS_00039868-exon-sc0002223-1575043694:7205..7841Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039868-proteinTCONS_00039868-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002223supercontigsc0002223:7205..7841 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.851465	0.231821	0.61401	0.195055	2.32339	1.46825	1.83734	2.20878	0.660642	0.308303	0.794754	0	0.266748	0.969596	0.66993	1.50879	0.607359	0.104213	1.07408	1.24739	0.418056	1.33365	0.896777	1.59945	1.50716	1.1515	1.07465	0.646114	1.04819	0.849014
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039868 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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