|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00039850 ID=TCONS_00039850|Name=TCONS_00039850|organism=Clytia hemisphaerica|type=transcript|length=610bp
TAGGCACTACGCATCATATTGGCATCGATTGATACACACGCTGGCCGCTA
CAAACGTTACATCGTGCCCTTGCTATCACTCAGCGCAGACTTCTACATTC
GTGTTTTCGTGCGTGTTTACACCAGTGCAGCAGAAGTGAAACGGTCGGCC
AGTAAGAAATCGTACATTTTTCACTGCAATGGTTGCGAATCGTTCCATTT
TCAACCAGTTGGAAAAAGTGTCGAAGTTGGAGACAGCAAGAAATTCAATC
CGGCCAGTGGGCCACCTGTCGGTCAGACGTGCATCCAATGTGGATATAAC
TTTAAAATCGGTGGCCCTGTATGGTCAGACCCGATCCATGACACGGCGTT
CTTGGCCAATTTACAAACGGAAGTTACAAACGAGAAAGAAAGCTATGCAA
CATACGACCGAATCAACGGAGTACTGAGTATAATGCAAGAGGAGCTAGCC
GACAGACCGTTGTATTACGTTTTGGATAGTCTGTGCAATACCCTTCATTC
AGTGACACCATCACACGCACAGTTCAGGTCTGCACTGTTGCACGCGGGAT
ACAAAGTATCGAGCACGCATGCGCACGAATCAGGAATCAAGACAGATGCA
CCTACGTCAG Run BLAST on NCBI transcript from alignment at sc0002222:5241..13536- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00039850 ID=TCONS_00039850|Name=TCONS_00039850|organism=Clytia hemisphaerica|type=transcript|length=8296bp|location=Sequence derived from alignment at sc0002222:5241..13536- (Clytia hemisphaerica)
TAGGCACTACGCATCATATTGGCATCGATTGATACACACGCTGGCCGCTA
CAAACGTTACATCGTGCCCTTGCTATCACTCAGCGCAGACTTCTACATTC
GTGTTTTCGTGCGTGTTTACACCAGTGCAGCAGAAGTGAAACGGTCGGCC
AGTAAGAAATCGTACATTTTTCACTGCAATGGTTGCGAATCGTTCCATTT
TCAACCAGGTAAGAATTTATAAATCATAAGAGGTCTGGGGAACCCCCCCC
CCCCCACTGCTCCTTTCATTTCAATCTTTTTTACGTTATAACTTCCATGT
CACAATAGTTTCTGTACAATTTTTACGAAGAGCTTTTTCATTGGCTAATA
ATGTAAATGCAGATTCTAGGATAATAGTTTCATGATGTTGTTTTTTATGT
ATTGAAAAAAATTTTGTTGGTCTAGAAGAGGGCGTTTTATCTTTGAGAGA
AACTTAGTTGGTCAGTAACTTTATACAGTATCAAGAGAATGCTTTTTAAT
TTCATGGATGTCACTATTGGGTGGCAATATTTTCACGATTTTGTGACTTC
TACTGTCAAACCATGCATTTTAATTGTTTTGAAATACACATTATTAGCGC
TTCTTTGATGCCTGTAAACATTCAAATAGTATTTGTTTGACATATTTTGA
GTTTTATTTAGAAATATTTCGCGGATGAGGCCCTTCCAAATTTCCATTGG
GATTTAATTTCGCGGATTTTCGCGGATGACACCCAAGTCCGCAAAATACG
CGAAAGTTTATCCCATTAAAGTAGATCATGAAAGGTAATAAAGATATAGA
TGGGGGAAAACGTCTCGGTTATGACCTAAATGGTCGTTGAAATCTTTTAT
AAATCCATTCAAAGCGGGTTTTCTTTGATGTGCCACTTTTGGAAGCAAAA
AAAATCCGAAATCTAAATTTATAAGAACAGAAGTGAGAATGTTATCCTGA
TTGAAATTAAACATATTATGCAAAAAGTTCTTATTCAAACGCGATACAAA
AATAATTTTCTCAAAGTAAGATTACAATAGTTCTATGATTTCATATCGAT
GTATTTTTGGGCAAACATAGACAAGTAAACTAGCCGTTGAAAACAGACCC
ATATACAAAAAAACAAGCTCCAAATAAAAAGAATCGAAGGGGTGAAGTTG
CGTCTCTTTTCTGAATTTCAACGACTAGAAGCTACTTCCCTCAAAAACCG
TTGTTTAATTTTACAACTTTTATTAGGTTTTTGAGAAATTTTTTTGACTA
AATGATATTTCATAGTAACATTGAACATGGGAACATAAATAAAAGAGCAT
TTCTAAAAACGCAATAAACAGAAAGAAAAATAAATGCAATCCCGCACGTC
AGACAGAAATCTGTATGTCTCTCCTTACGATTTTAGGTGAAGAAAAAAAG
GCGTTGGAAGAAGCTTCTAGTCGGTTATTTTTCTTTTCTCTCATGCGCGC
TGAATATTTAATTAGTGTTTACATTATTTATCTGGCACCCAGATGGTGAG
ATTTTCATCCGACACGCTAAAGCTCTGAAGGTCGGGAAAATTTTCAACAT
CTGGAAGGTTTAGATTACAGGACTTTGCGACACCGCGTCAAGAATTTTGC
AGCGGGAGGTCTGGTAACCCAGCCCTCGTTTTCGGGGATTGGCGGGTCCA
ACCGAAATATTTATAGGTTTACGGCCANNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCC
TCCCCGATGGGAAATTGGCCCGCTCCTTTAGAGCTTTAGCGTGGGCGGCC
GCCAATCCGCCATCGGAATATCAGATAATTACATTATTTGATTGACAGTT
TTATTATAAGGTTATAAGTAATAACCGACTAGTTTACTAGTCTAGGGCGA
ACATTGTGCTAATTTTGAGAGTTTTAGCACATTACCCTTGAAAAATTCTT
CATTATAAATCTTTACGTCTAAAAGGGAGGGGCTTTCAAATTCTGATTGA
TGATTAATTAAAAGGTTACCTAATCGTTCTATAGAATTCTTCTCAATTTT
ATGAGATGGGAGCCTTAGAAATATAGGATTTTGTACTTGTTACGGCAAGC
TTTTTCTTATATTGATCAACAAAGCTATTATCTCACATAAAAATCCAACA
TCTTTTTATTCAGCTTTTTATGAACTTAAATATTCCCATGAGCGCGCACA
AAATTGAGACAAGCTGGAGTTTTTACAAGCTCTTATTTGATTTGGTTGGT
CGTTAACCAGTAATAAAACAATTTTGTTACTTTTTCTAAAGAACGCGTCA
TCTCTTATCACTTCAAATGACAAATTAGTGAAGTATCTTGTAAAAACTCC
AGCTCATCCCACAAAATTGATCACTTTTTCCCATTGCAACCAAGGAGCCG
TTTGCTTCCGATGATTAGATACAAAGAAACAAAAGGAGTTAATTCTCCAT
TTATTTCTTATTACCTCTATGGATAGATCTACAGTGGGGCTTTGTACAGC
GCATGTCTTTACGTGTGCGCGAGGCTCGCGCGAGCTACGAGTACAAAATG
TATACGAGTACAAAATGTAAATTTATTCAGACTCGCTCAATGTGAGGTAT
TGCTTTATAAACTCACTACCTCGCTACTTTATTCACTCGTTTATCTATTG
CTTTATAAACTCGCTATTTCGCTACATTATTCACTCGTTTATCTATTGCT
TTATAACCTCGCTATTCCGCCACTTTATTCACTCGTTTATCTATTGCTTT
TTCTACTTGGCTACTTTATTCACTCTTTTATCTATTGGCACTTCGTTACT
TTATTCCCTCGTTTATCTATTGCTTTATAAACTCGCTATTTCGCTACATT
ATTCACTCGTTTATCTATTGCTTTATAACCTCGCTATTCCGCCACTTTAT
TCACTCGTTTATCTATTGCTTTTTCTACTTGGCTACTTTATTCACTCTTT
TATCTATTGGCACTTCGTTACTTTATTCCCTCGTTTATCTATTGCTTTAT
AAACTCGCTATTTCGCTACATTATTCACTCGTTTATCTATTGCTTTATAA
CCTCGCTATTCCGCCACTTTATTCACTCGTTTATCTATTGCTTTTTCTAC
TTGGCTACTTTATTCACTCTTTTATCTATTGGCACTTCGTTACTTTATTC
CCTCGTTTATCTATTGCTTTATAAACTCGCTATTTCGCTACATTATTCAC
TCGTTTATCTATTGCTTTATAACCTCGCTATTCCGCCACTTTATTCACTC
GTTTATCTATTGCTTTTTCTACTTGGCTACTTTATTCACTCTTTTATCTA
TTGGCACTTCGTTACTTTATTCCCTCGTTTATCTATTGCTTTATAAACTC
GCTATTTCGCTACATTATTCACTCGTTTATCTATTGCTTTATAACCTCGC
TATTCCGCCACTTTATTCACTCGTTTATCTATTGCTTTTTCTACTTGGCT
ACTTTATTCACTCTTTTATCTATTGGCACTTCGTTACTTTATTCCCTCGT
TTATCTATTGCTTTATAAACTCGCTATTTCGCTACATTATTCACTCGTTT
ATCTATTGCTTTATAACCTCGCTATTCCGCCACTTTATTCACTCGTTTAT
CTATTGCTTTTTCTACTTGGCTACTTTATTCACTCTTTTATCTATTGGCA
CTTCGTTACTTTATTCCCTCGTTTATCTATTGCTTTATAAACTCGCTATT
TCGCTACATTATTCACTCGTTTATCTATTGCTTTATAACCTCGCTATTCC
GCCACTTTATTCACTCGTTTATCTATTGCTTTTTCTACTTGGCTACTTTA
TTCACTCTTTTATCTATTGGCACTTCGTTACTTTATTCCCTCGTTTATCT
ATTGCTTTATAAACTCGCTATTTCGCTACATTATTCACTCGTTTATCTAT
TGCTTTATAACCTCGCTATTCCGCCACTTTATTCACTCGTTTATCTATTG
CTTTTTCTACTTGGCTACTTTATTCACTCTTTTATCTATTGGCACTTCGT
TACTTTATTCCCTCGTTTATCTATTGCTTTATAAACTCGCTATTTCGCTA
CATTATTCACTCGTTTATCTATTGCTTTATAAACTCGCTATTTCGCTACT
TTATTCACTCGTTTATCTATTGCTTTATAAACTCGCTATTTCGCCACTTT
ATTCACTCGTTTATCTATTGCTTTATAAACTCGCTACTTCGCTACTTTAT
TCACTCGTTTATCTATTGCTTTATAAACATGCAACTTTATTCACTCATTT
GTATATTACTTTATTTACTCGTAACTTCAAAGCTTCACTATACTTTGCTT
TGTCTATAATTTTGACTTCAAGTCTTCATACTTTGCTCTTCTAGAGAAAT
GAATTGAAGATAATTTTGCATTTTCTTCCAAACAACATCGCAAAATACTA
AAAATGCTTCGCAAACAGTTTGCGAGTCTCTGACACGCAAGGTTCGCGTA
CGTGTAAAGACATGCGAAAGCCCCACTGTACTGCTAGATCTCTTCCAGGA
ACATACTGATCAACCAATTCAAAATATGCACAACCGCAATGACTTCACGA
AATTATGCAACGTTTCTATTTTTGTTCCACCCAATACGTCACTTTTTCTA
TTGTTTAAGTGACGTATTGGGTTGAAAATTTTAAAATTTCACAGAAGACT
CTGCAGTGGTGCATATCATGAATTGTTTCTCTTGTTTAAATTTAGTTGGA
AAAAGTGTCGAAGTTGGAGACAGCAAGAAATTCAATCCGGCCAGTGGGCC
ACCTGTCGGTCAGACGTGCATCCAATGTGGATATAACTTTAAAATCGGTG
GCCCTGTATGGTCAGACCCGATCCATGACACGGCGTTCTTGGCCAATTTA
CAAACGGAAGTTACAAACGAGAAAGAAAGCTATGCAACATACGACCGAAT
CAACGGTAGCTATTCGTCCATTTTGTTAATATTTCACTATATGATAGTGT
TTTTAGAACTATTTCAAGTTCCATTTTTATAAGTAGCCCTTACATGAAGT
TATATCTGATCTGCTACTCTGGTGTCCTGCCGTCTGAGAAAAAATAGCTT
TTTAGATATTAAAAAAAAATAGGGCTTGAGTTGGGAGATTAAGAGACAGC
GATGGTCGATCATGAGCTGTGGAGGGAGGGTTATTATATGTTTCCGACAT
TTTCCGACATATGTTTCCGGTCTCCAAAGACGTAGATCGAAGGATGATTA
TGATGATGAGTCCTTGCACGCATGCCTTGCAACAAAAAACTTCAGAAAAA
TTAGATTGGACTTAAGTTCACCGGCGTGGATGACTTCAAAAATCCGAAAT
CATTCCACAGATACCGTAATTGACGCCATTCAATGATACACAATTTCACG
GTCATAAAGAATCATGGGTAATCAGGACCACTGCATTCTTCTATAATAGT
CTAAAACTTTGAATGTTTTTACTTCTAACCCAGCGCAAAGCCCTTACGAG
GGTGCAATCAGTTCATCTCGGCCATTTTGGCCTACGGTAGATAGAGGTAT
TCAAATATGGATTTAACCCTGTTAGTCCCAAGCTTTTTTGATTTTTGTAG
CCCCTTTTTGTAATCTACCACCCTCTATTATTTCTATCTAGAAGNGATTT
TTGTAGCCCCTTTTTGTAATCTACCACCCTCTATTATTTTTATCTAGGAA
AGTTTATGGCCTTAAAAATCGGTACAGATGTTCTCCATCATGAGACAACT
TTCAGGCAGAAAAAAAATTTTGTTGGTGAACAAAATTTCAACCTGTCAGA
AAAAGCGTATCTCACAGTCGAACCAGTAAAGATATTCAGATTCTGTTTGA
AGATTTTCAAAGATAAAAGACCTATGACTCAAATCGTTTCAGAAAATTTC
CTCCGAGATATACAAAAAAGAACACCATCGTGGTAGATTCTACCCCCTAG
GGCTCATAGTCATAGGGTTGAAGTTGATCATTTTTCCTTCTCTTTGTCTT
TCAGGAGTACTGAGTATAATGCAAGAGGAGCTAGCCGACAGACCGTTGTA
TTACGTTTTGGATAGTCTGTGCAATACCCTTCATTCAGTGACACCATCAC
ACGCACAGTTCAGGTCTGCACTGTTGCACGCGGGATACAAAGTATCGAGC
ACGCATGCGCACGAATCAGGAATCAAGACAGATGCACCTACGTCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00039850-exon-sc0002222-1575043694:13329..13536 | TCONS_00039850-exon-sc0002222-1575043694:13329..13536 | Clytia hemisphaerica | exon |
| TCONS_00039850-exon-sc0002222-1575043694:6482..6691 | TCONS_00039850-exon-sc0002222-1575043694:6482..6691 | Clytia hemisphaerica | exon |
| TCONS_00039850-exon-sc0002222-1575043694:5241..5432 | TCONS_00039850-exon-sc0002222-1575043694:5241..5432 | Clytia hemisphaerica | exon |
| TCONS_00039850-exon-sc0002222-1510915933:13329..13536 | TCONS_00039850-exon-sc0002222-1510915933:13329..13536 | Clytia hemisphaerica | exon |
| TCONS_00039850-exon-sc0002222-1510915933:6482..6691 | TCONS_00039850-exon-sc0002222-1510915933:6482..6691 | Clytia hemisphaerica | exon |
| TCONS_00039850-exon-sc0002222-1510915933:5241..5432 | TCONS_00039850-exon-sc0002222-1510915933:5241..5432 | Clytia hemisphaerica | exon |
| TCONS_00039850-exon-sc0002222-1491911889:13329..13536 | TCONS_00039850-exon-sc0002222-1491911889:13329..13536 | Clytia hemisphaerica | exon |
| TCONS_00039850-exon-sc0002222-1491911889:6482..6691 | TCONS_00039850-exon-sc0002222-1491911889:6482..6691 | Clytia hemisphaerica | exon |
| TCONS_00039850-exon-sc0002222-1491911889:5241..5432 | TCONS_00039850-exon-sc0002222-1491911889:5241..5432 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002222 | supercontig | sc0002222:5241..13536 - |
Blast
BLAST of TCONS_00039850 vs. Swiss-Prot (Human)
Match: TRM1 (tRNA (guanine(26)-N(2))-dimethyltransferase OS=Homo sapiens GN=TRMT1 PE=1 SV=1) HSP 1 Score: 220.32 bits (560), Expect = 3.771e-67 Identity = 105/203 (51.72%), Postives = 142/203 (69.95%), Query Frame = 1
Query: 4 ALRIILASIDTHAGRYKRYIVPLLSLSADFYIRVFVRVYTSAAEVKRSASKKSYIFHCNGCESFHFQPVGKSVEVGDSK-KFNPASGPPVGQTCIQCGYNFKIGGPVWSDPIHDTAFLANLQTEVTNEKESYATYDRINGVLSIMQEELADRPLYYVLDSLCNTLHSVTPSHAQFRSALLHAGYKVSSTHAHESGIKTDAPTS 609
ALRI+L S+D A Y+R++VPLLS+SADFY+RVFVRV+T A+VK SASK++ +F C GC +FH Q +GK+ V + KF+ A GPPV C CG ++GGP+W++PIHD F+ + V+ + T +RI GVLS++ EEL D PLYY LD L +T+H TPS Q RSALLHA ++VS +HA ++ +KTDAP S
Sbjct: 291 ALRIVLHSLDLRANCYQRFVVPLLSISADFYVRVFVRVFTGQAKVKASASKQALVFQCVGCGAFHLQRLGKASGVPSGRAKFSAACGPPVTPECEHCGQRHQLGGPMWAEPIHDLDFVGRVLEAVSANPGRFHTSERIRGVLSVITEELPDVPLYYTLDQLSSTIHCNTPSLLQLRSALLHADFRVSLSHACKNAVKTDAPAS 493
The following BLAST results are available for this feature:
|
