TCONS_00039847 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039847
Unique NameTCONS_00039847
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length361

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039847 ID=TCONS_00039847|Name=TCONS_00039847|organism=Clytia hemisphaerica|type=transcript|length=361bp
TTTAGTTTCaatagttttcagaaaaaagaactgttatgtttctatcaata
aagaattattttattcaaattcatgGGTACTTTCCCTACTTTCTAAGAGG
AGAATTTTATGACCACTAAGTTATACAAATATTGAAATAGTTAATGTAAA
GAAACCTATTGTTCAAAATCAGTATTGTTTTAATTAGTGAGAAGGATAGT
TCGTCTTTGATATCTCAAGTTAGAACGAGGTATTATGTTTGTCATTGCCT
TCTGATGAAAAGAATTACAAGCTGTTGCATCCAAAGTGATACACTgtctt
ttaaacaataaaattcttaTCCAAACTGATGATTGTTTTTGTTAGAGGGG
TTAGTTCAGGT
Run BLAST on NCBI

transcript from alignment at sc0002219:1004..1364

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039847 ID=TCONS_00039847|Name=TCONS_00039847|organism=Clytia hemisphaerica|type=transcript|length=361bp|location=Sequence derived from alignment at sc0002219:1004..1364 (Clytia hemisphaerica)
ACCTGAACTAACCCCTCTAACAAAAACAATCATCAGTTTGGAtaagaatt
ttattgtttaaaagacAGTGTATCACTTTGGATGCAACAGCTTGTAATTC
TTTTCATCAGAAGGCAATGACAAACATAATACCTCGTTCTAACTTGAGAT
ATCAAAGACGAACTATCCTTCTCACTAATTAAAACAATACTGATTTTGAA
CAATAGGTTTCTTTACATTAACTATTTCAATATTTGTATAACTTAGTGGT
CATAAAATTCTCCTCTTAGAAAGTAGGGAAAGTACCcatgaatttgaata
aaataattctttattgatagaaacataacagttcttttttctgaaaacta
ttGAAACTAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024121XLOC_024121Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039847-exon-sc0002219-1491911889:1004..1364TCONS_00039847-exon-sc0002219-1491911889:1004..1364Clytia hemisphaericaexon
TCONS_00039847-exon-sc0002219-1510915933:1004..1364TCONS_00039847-exon-sc0002219-1510915933:1004..1364Clytia hemisphaericaexon
TCONS_00039847-exon-sc0002219-1575043694:1004..1364TCONS_00039847-exon-sc0002219-1575043694:1004..1364Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002219supercontigsc0002219:1004..1364 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.264642	0.642699	2.16159	6.59357	0	1.60849	0.650187	2.80932	2.09179	0	0	0.377287	0.931387	0.161209	0.436057	0.296135	0.350434	0.305822	0	0.296773	3.39562	2.7719	1.33809	0.891943	1.25299	1.16097	4.49106	6.88201	2.25765	2.2035
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039847 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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