TCONS_00039846 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039846
Unique NameTCONS_00039846
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length941

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039846 ID=TCONS_00039846|Name=TCONS_00039846|organism=Clytia hemisphaerica|type=transcript|length=941bp
GTTAATTTTTATGTCGTTCGCTACCTATTTTGACCCTATTTCGACCCGAA
CGGCAGCTACAGTAAAAACACTATGAACAAGCTCGTGCAATGATGGCAGT
AAATCGTTTGATGGACTCAACCAATGGAATCTTAGTTACAGTTTTAAAAG
TTGATGAAAGAACACTCGTATGGTTTGTCGAAATATGATTTCTATTTATT
TAACCTGAAAACGATATGTCGCTTGAATTGGCCTACCAGTTTGGTACTCA
GAGAATTAAATTTATCGAAGCAATTTCTCACTCCTGTCGAACTCTAGAAT
ACATCTTCAAAAGTAATGACGATATTGAATTGGTCGTTTGGATGTTTCGT
GGTGAACGCGACGCACTATTAAAACTTTTGATTGATTTCCTAAAGCTTTA
CTCAGATTACGAATGTTTACTGTCAAACTGCCCAGATGAAGATGTATATG
GTAAAAACTTAATTGAAAACGCCTACAAACTCTTAGATTCTGCTCCTGAT
CATTTGAAAGATCATTACTTTGTCAACCCAGTCTTGGAAGAAGTTCCATT
GATAAATGTGAGCGTAGTCTCACCCCCGTCTGTGCAAGAAGTTGCATATA
TTTTTGACAAAGTTTTGAACGTCGAGAAATTGAGAAATGCGAGCATTGTC
TCACCCCCGTCTGTGCAAGAAGTTGCACATCATTGCGACAAAGTTTCAAC
TGCTGCtattgaaaaaaggaaattcaagTTCGTTCGAATTAAGTACTCAT
ATTTAGAACCCAACGATTCTACTGAACCCAACGATTCTACTGAACCATCC
GAAGAATCAGCAGTTTATTTTGAGGAAAATCATAAAGGTTTCGCACAATC
GATATTGCACTCCTTCAAACTGTTAAAGACTTGGTCAGAGGAATTAAGAC
GGCAAAACAAGGAACTTGAATTGAATAACATGATGTCATCA
Run BLAST on NCBI

protein sequence of TCONS_00039846-protein

>TCONS_00039846-protein ID=TCONS_00039846-protein|Name=TCONS_00039846-protein|organism=Clytia hemisphaerica|type=polypeptide|length=242bp
MSLELAYQFGTQRIKFIEAISHSCRTLEYIFKSNDDIELVVWMFRGERDA
LLKLLIDFLKLYSDYECLLSNCPDEDVYGKNLIENAYKLLDSAPDHLKDH
YFVNPVLEEVPLINVSVVSPPSVQEVAYIFDKVLNVEKLRNASIVSPPSV
QEVAHHCDKVSTAAIEKRKFKFVRIKYSYLEPNDSTEPNDSTEPSEESAV
YFEENHKGFAQSILHSFKLLKTWSEELRRQNKELELNNMMSS
Run BLAST on NCBI

transcript from alignment at sc0002218:20783..21723

Legend: exonCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039846 ID=TCONS_00039846|Name=TCONS_00039846|organism=Clytia hemisphaerica|type=transcript|length=941bp|location=Sequence derived from alignment at sc0002218:20783..21723 (Clytia hemisphaerica)
TGATGACATCATGTTATTCAATTCAAGTTCCTTGTTTTGCCGTCTTAATT
CCTCTGACCAAGTCTTTAACAGTTTGAAGGAGTGCAATATCGATTGTGCG
AAACCTTTATGATTTTCCTCAAAATAAACTGCTGATTCTTCGGATGGTTC
AGTAGAATCGTTGGGTTCAGTAGAATCGTTGGGTTCTAAATATGAGTACT
TAATTCGAACGAActtgaatttccttttttcaataGCAGCAGTTGAAACT
TTGTCGCAATGATGTGCAACTTCTTGCACAGACGGGGGTGAGACAATGCT
CGCATTTCTCAATTTCTCGACGTTCAAAACTTTGTCAAAAATATATGCAA
CTTCTTGCACAGACGGGGGTGAGACTACGCTCACATTTATCAATGGAACT
TCTTCCAAGACTGGGTTGACAAAGTAATGATCTTTCAAATGATCAGGAGC
AGAATCTAAGAGTTTGTAGGCGTTTTCAATTAAGTTTTTACCATATACAT
CTTCATCTGGGCAGTTTGACAGTAAACATTCGTAATCTGAGTAAAGCTTT
AGGAAATCAATCAAAAGTTTTAATAGTGCGTCGCGTTCACCACGAAACAT
CCAAACGACCAATTCAATATCGTCATTACTTTTGAAGATGTATTCTAGAG
TTCGACAGGAGTGAGAAATTGCTTCGATAAATTTAATTCTCTGAGTACCA
AACTGGTAGGCCAATTCAAGCGACATATCGTTTTCAGGTTAAATAAATAG
AAATCATATTTCGACAAACCATACGAGTGTTCTTTCATCAACTTTTAAAA
CTGTAACTAAGATTCCATTGGTTGAGTCCATCAAACGATTTACTGCCATC
ATTGCACGAGCTTGTTCATAGTGTTTTTACTGTAGCTGCCGTTCGGGTCG
AAATAGGGTCAAAATAGGTAGCGAACGACATAAAAATTAAC

Coding sequence (CDS) from alignment at sc0002218:20783..21723

>TCONS_00039846 ID=TCONS_00039846|Name=TCONS_00039846|organism=Clytia hemisphaerica|type=CDS|length=726bp|location=Sequence derived from alignment at sc0002218:20783..21723 (Clytia hemisphaerica)
TGATGACATCATGTTATTCAATTCAAGTTCCTTGTTTTGCCGTCTTAATT
CCTCTGACCAAGTCTTTAACAGTTTGAAGGAGTGCAATATCGATTGTGCG
AAACCTTTATGATTTTCCTCAAAATAAACTGCTGATTCTTCGGATGGTTC
AGTAGAATCGTTGGGTTCAGTAGAATCGTTGGGTTCTAAATATGAGTACT
TAATTCGAACGAActtgaatttccttttttcaataGCAGCAGTTGAAACT
TTGTCGCAATGATGTGCAACTTCTTGCACAGACGGGGGTGAGACAATGCT
CGCATTTCTCAATTTCTCGACGTTCAAAACTTTGTCAAAAATATATGCAA
CTTCTTGCACAGACGGGGGTGAGACTACGCTCACATTTATCAATGGAACT
TCTTCCAAGACTGGGTTGACAAAGTAATGATCTTTCAAATGATCAGGAGC
AGAATCTAAGAGTTTGTAGGCGTTTTCAATTAAGTTTTTACCATATACAT
CTTCATCTGGGCAGTTTGACAGTAAACATTCGTAATCTGAGTAAAGCTTT
AGGAAATCAATCAAAAGTTTTAATAGTGCGTCGCGTTCACCACGAAACAT
CCAAACGACCAATTCAATATCGTCATTACTTTTGAAGATGTATTCTAGAG
TTCGACAGGAGTGAGAAATTGCTTCGATAAATTTAATTCTCTGAGTACCA
AACTGGTAGGCCAATTCAAGCGACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024120XLOC_024120Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039846-exon-sc0002218-1491911889:20783..21723TCONS_00039846-exon-sc0002218-1491911889:20783..21723Clytia hemisphaericaexon
TCONS_00039846-exon-sc0002218-1510915933:20783..21723TCONS_00039846-exon-sc0002218-1510915933:20783..21723Clytia hemisphaericaexon
TCONS_00039846-exon-sc0002218-1575043694:20783..21723TCONS_00039846-exon-sc0002218-1575043694:20783..21723Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039846-proteinTCONS_00039846-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002218supercontigsc0002218:20783..21723 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.69634	2.59946	1.20729	0.697947	0.457522	0.413189	0.249247	0.641691	0.0816842	0.202358	0	0.0645573	0.0322338	0.100425	0.137605	0.324878	0.218303	0.335631	0	0	0.140582	0.0685707	1.16699	1.3641	0	0	0.0664577	0.0709254	0.430355	0.657696
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039846 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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